Hi, I am following your tutorial but the keyboard controls do not work on my program... shift + q or shift + R, etc. How can I fix that? Also, I noticed that when I refine, my program refines in a totally different way than yours... usually all the green bars that you get, on my program are yellow and red and my model is totally different than yours even though I follow every step :/
In the rotamer outlier 32, how did you know which rotamer was correct? All of them seem to be actually out of the blue blob, so how to know which one is correct? Also, because on your screen the window with rotamers is hidden, I cannot see which one is finally the right one?
This is a tutorial/model from 2004. It was more likely that one might see main chain anomalies in models of unknown provenance then than today. Missing or messed up loops and termini are complete par for the course even today. The point of the tutorial is not to speculate on why models contain errors, but to fix them.
Wow WOW WOW !!!!
This old biochemist has never seen anything sooooo cool. Amazing !!!
Very nice tutorial. Clear and sufficient valuable information.
Awesome video. How can I have these validation tool in my coot? In my validation options, there is not this last option you used. Thanks
See "Coot Tutorial: How to setup your Coot (x-ray)"
@@PaulEmsley thank you so much!
Hi, I am following your tutorial but the keyboard controls do not work on my program... shift + q or shift + R, etc. How can I fix that? Also, I noticed that when I refine, my program refines in a totally different way than yours... usually all the green bars that you get, on my program are yellow and red and my model is totally different than yours even though I follow every step :/
In the rotamer outlier 32, how did you know which rotamer was correct? All of them seem to be actually out of the blue blob, so how to know which one is correct? Also, because on your screen the window with rotamers is hidden, I cannot see which one is finally the right one?
Timestamp?
why would that nitrogen be missing from the model, and the 3 amino acids at the C terminus?
This is a tutorial/model from 2004. It was more likely that one might see main chain anomalies in models of unknown provenance then than today. Missing or messed up loops and termini are complete par for the course even today. The point of the tutorial is not to speculate on why models contain errors, but to fix them.
very nice! how can we hide the dashed lines in missing loops in Ca mode? thanks.
How to do that is described in the blog.
@@PaulEmsley Thanks! Got it.
the keyboard controls do not work
See the previous videos - this video is titled *Beyond* the Basics.