1. Installation of Schrodinger-Desmond Software (academic version) for Molecular Dynamic Simulation

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  • เผยแพร่เมื่อ 5 พ.ย. 2024

ความคิดเห็น • 27

  • @BasicScienceSeries
    @BasicScienceSeries ปีที่แล้ว

    Also please provide best hardware requirements for running the desmond software.

  • @fishhubbd
    @fishhubbd 3 ปีที่แล้ว +2

    Very informative

  • @biosolcentre1794
    @biosolcentre1794  3 ปีที่แล้ว +3

    How to install Desmond on Liunux (Ubuntu)
    1. Go to
    www.deshawresearch.com/downloads/download_desmond.cgi/
    Fill up the from
    2. Download
    Installation Kit for Desmond/Maestro non-commercial version 2020.1 (2.5 GB, March 20, 2020)
    I have downloaded that file before
    Copy the download file
    3. Go to terminal
    3.1 Type sudo nautilus
    3.2 Enter your PC password
    3.3 Press enter
    4. Paste copied file the you copied from the downloads
    5. Unzip the file
    6. Enter into the file
    7. Open terminal
    8. Type ls
    9. Type chmod 777 *
    10. Type ./INSTALL
    11. Press Enter
    12. Press Enter
    13. Press Enter
    14. Press Enter
    15. Press Enter
    16. Type /tmp
    17. Press Enter
    18. Type y
    IT will take some time depends on your computer power
    19. Press Enter
    20. Press Enter
    21. Press Enter
    22. Press Enter
    23. Press Enter
    Desmond Instalation is completed when you see “ ***** Schrodinger software installation is complete. *****” This on the terminal.
    Desmond Install is complete !
    How to open desmond
    24. Close the all terminal and tab
    25. Go to home
    26. Open terminal
    27. Type cd /opt/schrodinger2020-1/
    28. Type ./mestro
    It might be take some time to open the DESMOND. It depends on your computer power.
    Congratulations you have successfully installed desmond and open it. Now you can run you simulation.
    Thanks for watching and stay with BioSol Centre.

    • @patilnil9761
      @patilnil9761 2 ปีที่แล้ว +1

      I got error od mkdir: cannot create directory 'opt/schrodinger2021-1' : permission denied.....
      How can i resolve it?

    • @kansgeneral2979
      @kansgeneral2979 ปีที่แล้ว

      @@patilnil9761 have you add a sudo ?

  • @chemistryforall-bynsridhara
    @chemistryforall-bynsridhara ปีที่แล้ว

    Thanks for the video
    I followed the steps mentioned here
    It is showing me : permission denied
    please help me install the desmond

  • @BasicScienceSeries
    @BasicScienceSeries ปีที่แล้ว

    No response after filling the desmond registration form. What to do?

  • @ES-yd1ze
    @ES-yd1ze ปีที่แล้ว +1

    I have already installed maestro free software and now I need to install Desmond software should I have delete maestro initially and then install Desmond or not Please sir answer

    • @busuyiadebayo851
      @busuyiadebayo851 11 หลายเดือนก่อน

      Desmond should be in your Free Maestro. Go check there!

  • @BasicScienceSeries
    @BasicScienceSeries ปีที่แล้ว

    Can we run desmond on windows system? Please reply!

  • @sumirankapur5998
    @sumirankapur5998 2 ปีที่แล้ว

    Hello
    Your video is really informative, I followed each step but at one step one error I am facing is it is continuously showing me creating directories: permission denied.
    Could you please help me with this.

  • @abdeentunde7040
    @abdeentunde7040 2 ปีที่แล้ว

    Thanks for the video. After following the procedure and successfully installed Desmond, i faced the following error during molecular dynamics
    I keep getting a Multisim Failure in Desmond using Schrodinger's Maestro interface
    Multisim summary (Wed Feb 9 14:01:32 2022):
    Stage 1 completed.
    Stage 2 failed.
    Stage 3 not run.
    Total duration: 0h 1' 20"
    Multisim failed.

    • @HRRYNZNS
      @HRRYNZNS 9 หลายเดือนก่อน

      Did you fix the problem? I have the same problem

  • @RohitDas-or8cp
    @RohitDas-or8cp 3 ปีที่แล้ว

    make a video regarding ligand screening through gold or glide

  • @ogunoluwamayowa4749
    @ogunoluwamayowa4749 3 ปีที่แล้ว

    Informative, Please can you kindly share the least GPU size recommended for such installation. Thanks

    • @biosolcentre1794
      @biosolcentre1794  2 ปีที่แล้ว

      Rtx 3070 GPU

    • @surajitsarker8950
      @surajitsarker8950 2 ปีที่แล้ว

      @@biosolcentre1794 Will it not work on rtx 3050 Nvidia Geforce Graphics Card for say 50ns simulation?

  • @mohsenabbod9970
    @mohsenabbod9970 3 ปีที่แล้ว

    iI am pleased to inform you that I filled the form, but I didn't receive the download link till now

    • @RohitDas-or8cp
      @RohitDas-or8cp 3 ปีที่แล้ว +1

      click the 1st option i.e. Installation Kit for Desmond/Maestro non-commercial version 2021.1 (3.5 GB, Febuary 23, 2021) fill the form then automatically download begins.

    • @mohsenabbod9970
      @mohsenabbod9970 3 ปีที่แล้ว

      @@RohitDas-or8cp it didnt work

    • @mohsenabbod9970
      @mohsenabbod9970 3 ปีที่แล้ว

      @@RohitDas-or8cpwouid u please send me a link for that,

    • @mokadrissi5367
      @mokadrissi5367 ปีที่แล้ว

      @@RohitDas-or8cp wouid u please send me a link for that

  • @arunpandiyan2302
    @arunpandiyan2302 2 ปีที่แล้ว

    i have filled the form and till now i didn't get download link. please help me bro