You should create the grid according to the binding pocket of your protein. If you are going to use autodock 4.2 so in that you can get the grid generation and docking parameters file generation.
Thanks! I'm currently working on this. It's been very helpull to confirm that the process is the same, I guess what can vary is the platform or software you use, but the methodology is the same. I'm currently working with these software: Avogadro for ligand preparation. Chimera for protein preparation and molecular docking itself.
How to make grid and set docking parameters?
You should create the grid according to the binding pocket of your protein. If you are going to use autodock 4.2 so in that you can get the grid generation and docking parameters file generation.
Thanks! I'm currently working on this. It's been very helpull to confirm that the process is the same, I guess what can vary is the platform or software you use, but the methodology is the same. I'm currently working with these software: Avogadro for ligand preparation. Chimera for protein preparation and molecular docking itself.
I find it helpful
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