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Genomics Education Partnership
United States
เข้าร่วมเมื่อ 28 ต.ค. 2020
The Genomics Education Partnership (GEP) is a nationwide community of faculty from more than 100 colleges and universities dedicated to facilitating equity in undergraduate biology education. GEP provides training, resources, and mentorship to empower faculty to provide their students experiential learning and Course-based Undergraduate Research Experiences (CUREs) in genomics and bioinformatics. GEP celebrates the diverse types of institutions and students represented by our faculty and are committed to recruiting and mentoring faculty at institutions especially well-poised to serve students from historically underrepresented groups. Equitable access to research and the associated career development opportunities can help build a more representative biomedical community, one that is fair and just.
Eggshell biomineralization genes in the critically endangered Puerto Rican parrot
The Puerto Rican parrot (Amazona vittata) is the last surviving species of parrots native to lands under the U.S. jurisdiction. It was listed as a critically endangered species in 1967 under the Endangered Species Preservation Act, being considered one of the ten most endangered bird species in the world. Reduced eggshell strength and the consequential loss of offspring is one of the main problems often found by parrot breeders. The Puerto Rican Parrot Project is focused on annotating genes known to be differentially expressed in the uterus during eggshell deposition with the aim of finding genetic differences between the Puerto Rican parrot and its sister species.
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Learn more about the GEP: thegep.org
Follow GEP on Twitter: GEP_CURE
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Learn more about the GEP: thegep.org
Follow GEP on Twitter: GEP_CURE
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มุมมอง: 73
วีดีโอ
Splicing | A GEP Tutorial
มุมมอง 24310 หลายเดือนก่อน
This video contains just about everything you need to know to understand splicing in the context of genome annotation in eukaryotes for GEP projects by Christina Ray Santos. 0:00 Introduction 0:40 Conceptual Overview of Splicing 1:49 Standard Anatomy of a Gene 6:20 Interpreting Reading Frames 11:03 Interpreting Phases 14:53 Alternative Splicing - Learn more about the GEP: thegep.org Follow GEP...
Parasitoid Wasps Project Overview | GEP Alumni Faculty Workshop 2021
มุมมอง 577ปีที่แล้ว
Parasitoid Wasps Project Overview | GEP Alumni Faculty Workshop 2021
Intro to Parasitoid Wasps Project NMT 2022
มุมมอง 41ปีที่แล้ว
- Learn more about the GEP: thegep.org Follow GEP on Twitter: GEP_CURE -
Why Study the F Element?
มุมมอง 3842 ปีที่แล้ว
In this lecture for the 2022 GEP Summer Scholars program, Professor Sarah C. R. Elgin from Washington University in St. Louis describes the scientific rationale for using comparative genomics to study the expansion of the Muller F Element in four Drosophila species. The Drosophila melanogaster Muller F Element (also known as the “dot” chromosome) exhibits unusual characteristics - while the F E...
Intro to F Element Project
มุมมอง 7832 ปีที่แล้ว
In this lecture for the July 2022 GEP New Member Training, Professor Sarah C. R. Elgin from Washington University in St. Louis describes the research aims for the Drosophila F Element Expansion project. The lecture begins with a brief overview of the C-value paradox, the impact of transposable elements on eukaryotic genomes, and the packaging of DNA into chromatin. The lecture then presents the...
How to Capture Screen Portion - Mac
มุมมอง 282 ปีที่แล้ว
Briefly shows students using a Mac how to capture a portion of their screen. - NO AUDIO Image Credit: support.apple.com/en-us/HT201361 Learn more about the GEP: thegep.org Follow GEP on Twitter: GEP_CURE -
The Genomics Education Partnership: Democratizing Genomics Research Experiences Nationwide
มุมมอง 942 ปีที่แล้ว
This video accompanies the BIOME 2022 poster presented by Katie M. Sandlin, Director of Communications at the Genomics Education Partnership. The BIOME (Biology and Mathematics Educators) Institute, hosted by BioQUEST, offers a unique opportunity to engage with a community of peers to address an educational challenge with the ultimate goal of improving student outcomes. The theme for BIOME 2022...
RStudio Introduction
มุมมอง 1332 ปีที่แล้ว
Video provides an overview of downloading and installing both R and RStudio, which students need to do prior to completing Module 1: Introduction to R and RStudio by exploring eukaryotic genomes. - Learn more about the GEP: thegep.org Follow GEP on Twitter: GEP_CURE -
Investigating the Strange Case of the Drosophila Dot Chromosome
มุมมอง 2282 ปีที่แล้ว
In this lecture, Professor Sarah C.R. Elgin from Washington University in St. Louis provides an overview of the scientific rationale for studying the Drosophila Muller F Element. The Drosophila melanogaster Muller F Element (also known as the fourth chromosome or the "dot" chromosome) is largely heterochromatic. However, the distal 1.3 Mb of the D. melanogaster dot chromosome contains ~80 prote...
GEP Tools | Dot Plots and Protein Alignments
มุมมอง 5102 ปีที่แล้ว
An introductory video on the analysis of dot plots and protein alignments, presented by GEP Virtual TA Rae Lucas. The dot plots and protein alignments presented in this video were generated from Gene Model Checker, with our reference organism being Drosophila melanogaster. We begin with an overview of protein alignments and how we interpret their various features, along with what this means for...
GEP Tools | Using the RNA-Seq Tracks
มุมมอง 5382 ปีที่แล้ว
A video describing RNA-Seq by Virtual GEP TA Christina Ray Santos. We start off with a guided navigation to the GEP UCSC Genome Browser, where GEP student annotators can view their gene models, and then take a step back to talk about how it’s obtained, how scientists can use it to analyze transcriptomes and how they vary between species, organisms, or even cells. This leads into the topic of al...
Sequencing, Variant Calling, and Cancer Genomics
มุมมอง 4.8K3 ปีที่แล้ว
This video provides an overview of second and third generation sequencing technologies and their use in comprehensive clinical approaches to diagnosing and treating cancers via personalized genomic medicine. This talk was originally given at the 2021 GEP Faculty Alumni Workshop by Dr. Christopher A. Miller (Washington University School of Medicine) on June 12, 2021. Manually edited closed capti...
Parasitoid Wasps Project
มุมมอง 5513 ปีที่แล้ว
Dr. Nathan Mortimer, an Assistant Professor of Cellular Immunology at Illinois State University, gave a scientific talk on the GEP's Parasitoid Wasps Project at the Texas/Oklahoma Regional Node Meeting on January 5, 2021. - Learn more about the Parasitoid Wasps Project: thegep.org/wasps/ Follow GEP on Twitter: GEP_CURE -
Democratizing Genomics Research Experiences in a Pandemic
มุมมอง 3313 ปีที่แล้ว
This video looks at how the GEP adapted to the global pandemic to strengthen a growing virtual community of faculty that promotes and supports students’ intellectual engagement, active learning, and undergraduate research while requiring nothing more than a computer with internet access. - This video was featured in the 2021 STEM for All Video Showcase funded by the National Science Foundation ...
Understanding Conservation of Regulatory Domains Bound to Promoter Regions in Insulin/TOR Pathway
มุมมอง 1233 ปีที่แล้ว
Understanding Conservation of Regulatory Domains Bound to Promoter Regions in Insulin/TOR Pathway
Careers in Genomics: Genetic Counseling
มุมมอง 3263 ปีที่แล้ว
Careers in Genomics: Genetic Counseling
Impact of GEP CURE on Student's Scientific Journey
มุมมอง 673 ปีที่แล้ว
Impact of GEP CURE on Student's Scientific Journey
GEP | Pathways Annotation - Preparing for Submission
มุมมอง 6673 ปีที่แล้ว
GEP | Pathways Annotation - Preparing for Submission
GEP | Pathways Annotation - CDS Annotation and Refinement
มุมมอง 2.2K3 ปีที่แล้ว
GEP | Pathways Annotation - CDS Annotation and Refinement
Great presentation and awesome science done by Elgin lab. I'm sure we will get to know more about the origins of 4th chromosome's peculiar chromatin state soon
Wow! What a great no-nonsense presentation. Clean, clear and informative.
Glad it was helpful!
A lucid, tidy lesson on an intricate subject. I searched a fair amount; this is the best explanation of phase I've seen. Thank you!
Glad it was helpful!
Helpful!
Glad you think so!
Could you please let me know the name of the previous video that showed how to fill out the annotation report?
The video covering how to complete to annotation form isn't necessary for the current version of the form. However, some instructors are using the prior version which is explained in th-cam.com/video/yV0vujABsaE/w-d-xo.html
Thank you so much for the guidance. I was close to having a mental breakdown as there were over 20 pages of instructions for this particular lab. You saved me an entire day of panic and shrunk it to 1 hour of productive work. God bless you sir!
Glad it helped!
Thank you for this amazing lecture!!!
Glad it was helpful!
At the end of this video it says the next video (video 2) will go into detail about how to fill out "Part A. Gene Report Form", but then in next video (video 3) it already has that part filled out and skips too "Part B. CDS Report Form". So I was wondering if there is a video for how to fill out Part A? Seems like there was supposed to be one based on what is said in the videos. Thanks so much!
Apologies for the confusion! The video had to be taken down due to an error. You can use the documentation in the Pathways Project: Annotation Walkthrough (thegep.org/lessons/ksandlin-walkthrough-drosophila_pathways/) as as proxy.
what sequence file are you uploading?
This was a really confusing video to understand
Thank you for the feedback. Do you mind sharing how we could improve it to make it more useful for you?
very confusing honestly i agree not helpful at all
@@GenomicsEducationPartnership i think it should be done on genome browser
Thanks for the input, I will be sure to pass this info along to the curriculum team.
thank you soo much brother
We're glad you found this video helpful!
Have you posted the method to fill out the rest of the form? Is it on another youtube channel?
Hi Rizam, We're working to get more videos created and hope to have them all up before the Spring 2021 semester starts up! Cheers, Katie
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