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Thank you very much for your explanation It's very interesting and useful who are in early learning stage

Dear great and innovative way of transferring the knowledge among the beginners. Kind share the complete setup of pyrx in ziped or google drive because i am unable to download the pyrx. Please share the setup. Thanks

Do we need to make a ligand library prior to docking?

i am trying to save the files in .pdb format but by default it has been saved in biovia. how do I resolve it?

Thank you so much

config file link is not working mam please put it there

madam, don't we have to do energy minimizing before we run autodock

Is the co crystal ligand is not removed is this can make issue or not?

excellent, Thks

Map file is not generating..How to solve this?

This video was very helpful, thank you. You're a lifesaver.

many many thanks

Hello madam We need to cover only the protein with the grid box or both the protein and the ligand.

I am facing problem in run step Its not getting launch Please help me with my problem

thank you

I have many ligands and each ligand has different active site.. how should i define box parameters

Thank you so much ma'am 🙏❤️

How to dock multiple ligands by using vina

Very informative clear explaination and make more videos on molecular docking waiting for your videos

Thank you it was really helpful, I wish if you can made a video about re docking and how to get rmsd value for validation of program...I really need that...😢😢

Maam I am getting problem at last when I reach at last step in command prompt it is written in error could not open "protien.pdbqt" for docking

Excellent explanation mam

😍😍

I had been trying to run docking but there was always some problem, that i couldn't get my results. Thanks to you i finally got my results. much love and thanks🥰

Can I made nanodomains sturcture this software.

Is pyrx used to analyse protein protein interaction

Hi mam.., .dock.dpf file was not open,why this problem arise

Split_exe not working shows the it is not recognised as an internal or external command

Thankyou, helped a lot, I need for metal- organic ligand docking, kindly provide a video about it

Hi, the Drive file isn't there kindly update on the issue

How to Zoom the ligand??

Thanks mam I was able to do the docking with this video thanks a lot mam

I got the results of docking, but the problem is that I don't know how to explain the results in my paper

what should i do if Parse error on line 1474 in file "CREB5_pdbqt.pdbqt": Unknown or inappropriate tag please help I stuck with it

Am not able to get the 2d and 3d interaction diagram in the last step pls explain

When i do select grid ~ macromolecule ~choose~select protien then show a different interface like as error please help

U are just awesome

Excellent!!!!!

So, how do you save these files in pdbqt format for molecular dynamics

We use molegro molecular viewer to remove water molecules...

I am here 2024,this is great. Please continue posting 😊

Hbb gene docking 147***gpcrs 7*❤ honey 👌🧬 biological treatment

If i have a peptide ligand with 20 amino acids would it work??

Hi, thankS fro the video but why did you delete the chain B?

Without thimble how can work perfectly

I'm facing an error while converting pdb to pdbqt

Nice

Thanks so much . How can i enter my center for grid box?

Please make video on pharamacosphere analysis using ligand and receptor