- 309
- 64 485
Euro-BioImaging Communication
เข้าร่วมเมื่อ 4 ก.ย. 2017
Euro-BioImaging is the European landmark research infrastructure for biological and biomedical imaging as recognised by the European Strategy Forum on Research Infrastructures (ESFRI). Through Euro-BioImaging, life scientists can access imaging instruments, expertise, training opportunities and data management services that they might not find at their home institutions or among their collaboration partners. All scientists, regardless of their affiliation, area of expertise or field of activity can benefit from these pan-European open access services, which are provided with high quality standards by leading imaging facilities.
Anne Plant: Metrology Meets Data Sharing
This presentation will reference work in the National Institute of Standards and Technology laboratories, including current microscopy work, and also interlaboratory comparison studies, as examples of approaches to providing and sharing FAIR data.
The presentation was delivered by Anne Plant, NIST Fellow, National Institute of Standards and Technology, USA, during the foundingGIDE Community Meeting in Okazaki, Japan (31 October-01 November 2024).
Slides are available at: zenodo.org/records/14408456
foundingGIDE: founding a Global Imaging Data Ecosystem is a EU Horizon-funded project between Euro-BioImaging ERIC, EMBL, Consiglio Nazionale delle Ricerche (Italy), German BioImaging, Global BioImaging, RIKEN (Japan), Microscopy Australia and Australian National Imaging Facility.
More information on the project at: founding-gide.eurobioimaging.eu
The presentation was delivered by Anne Plant, NIST Fellow, National Institute of Standards and Technology, USA, during the foundingGIDE Community Meeting in Okazaki, Japan (31 October-01 November 2024).
Slides are available at: zenodo.org/records/14408456
foundingGIDE: founding a Global Imaging Data Ecosystem is a EU Horizon-funded project between Euro-BioImaging ERIC, EMBL, Consiglio Nazionale delle Ricerche (Italy), German BioImaging, Global BioImaging, RIKEN (Japan), Microscopy Australia and Australian National Imaging Facility.
More information on the project at: founding-gide.eurobioimaging.eu
มุมมอง: 39
วีดีโอ
Welcome to foundingGIDE Community Event 2024 - Shuichi Onami, John Eriksson, Aastha Mathur
มุมมอง 57วันที่ผ่านมา
Opening speeches for foundingGIDE Community Event 2024 by Shuichi Onami, John Eriksson, Aastha Mathur
Lucy Collinson: The volume EM community, and data in correlative and multimodal imaging
มุมมอง 33วันที่ผ่านมา
This presentation introduces the recent efforts of the volume electron microscopy community to network globally and to build resources for imaging scientists and end users, and discuss challenges in the scale and multimodality of correlative image data. The presentation was delivered by Lucy Collinson, Head of Electron Microscopy at The Francis Crick Institute, UK, during the foundingGIDE Commu...
Kazutsuna Yamaji: Current Status for Developing the Common Research Data Platform in Japan
มุมมอง 27วันที่ผ่านมา
Current Status for Developing the Common Research Data Platform in Japan. The presentation was delivered by Kazutsuna Yamaji, Digital Content and Media Sciences Research Division, Professor, National Institute of Informatics, Japan, during the foundingGIDE Community Meeting in Okazaki, Japan (31 October-01 November 2024). foundingGIDE: founding a Global Imaging Data Ecosystem is a EU Horizon-fu...
Masanori Arita: Data Sharing of Genetic Resources: perspectives from an INSDC member
มุมมอง 13วันที่ผ่านมา
The presentation was delivered by Masanori Arita, Head, Bioinformation and DNA Data Bank of Japan Center (DDBJ), National Institute of Genetics, Japan, during the foundingGIDE Community Meeting in Okazaki, Japan (31 October-01 November 2024). foundingGIDE: founding a Global Imaging Data Ecosystem is a EU Horizon-funded project between Euro-BioImaging ERIC, EMBL, Consiglio Nazionale delle Ricerc...
AQUARIUS Transnational Funding call
มุมมอง 12วันที่ผ่านมา
In this video, Aodhán Fitzgerald, Coordinator of the AQUARIUS project is introducing the project objectives, activities and access funding opportunities for marine researchers. This video was recorded as part of the ANERIS project workshop "Underwater Imaging, Bio-optic, and Participatory Technologies". For more information about ANERIS: www.ANERIS.eu
Matthew Hartley: FoundingGIDE: Ontologies, metadata, identifiers, oh my!
มุมมอง 16วันที่ผ่านมา
The presentation was delivered by Matthew Hartley, Team Leader at BioImage Archive, EMBL European Bioinformatics Institute, UK, during the foundingGIDE Community Meeting in Okazaki, Japan (31 October-01 November 2024). foundingGIDE: founding a Global Imaging Data Ecosystem is a EU Horizon-funded project between Euro-BioImaging ERIC, EMBL, Consiglio Nazionale delle Ricerche (Italy), German BioIm...
Matthew Hartley: Image data interoperability with OME-NGFF, RO-Crate and linked data
มุมมอง 49วันที่ผ่านมา
Global image data sharing is an important long term goal, but requires practical mechanisms for enabling cross-compatibility on which we can build. The presentation was delivered by Matthew Hartley, Team Leader at BioImage Archive, EMBL European Bioinformatics Institute, UK, during the foundingGIDE Community Meeting in Okazaki, Japan (31 October-01 November 2024). foundingGIDE: founding a Globa...
Shuichi Onami: Landscape analysis of metadata usage in major bioimage repositories
มุมมอง 22วันที่ผ่านมา
The presentation was delivered by Shuichi Onami, Team Leader, Laboratory for Developmental Dynamics, RIKEN, Japan, during the foundingGIDE Community Meeting in Okazaki, Japan (31 October-01 November 2024). foundingGIDE: founding a Global Imaging Data Ecosystem is a EU Horizon-funded project between Euro-BioImaging ERIC, EMBL, Consiglio Nazionale delle Ricerche (Italy), German BioImaging, Global...
David Poger: The Australian PID Strategy and Roadmap
มุมมอง 15วันที่ผ่านมา
The Australian PID Strategy and Roadmap - An opportunity in Microscopy Australia’s journey to FAIR and CARE - David Poger In this presentation, Dr David Poger describes the concept of persistent identifier (PID) and its use cases in research. The Australian National PID Strategy and Roadmap that was initiatiated in 2023 by the Australia Research Data Commons (ARDC) in partnership with the Austr...
Josh Moore: OME2024 NGFF Challenge Results
มุมมอง 26วันที่ผ่านมา
Josh introduced OME-ZARR, a standardized format for multi-resolution pyramid storage in bioimaging. The OME-ZARR Challenge (OME2204) successfully demonstrated the format's ability to handle and visualize massive datasets. This presentation is linked to this presentation from Global BioImaging Exchange of Experience 2024: th-cam.com/video/C8yXQoEKtik/w-d-xo.html Slides can be found at: zenodo.or...
Thomas Close: Frametree: mapping data trees onto frames for “in-place” analysis of large datasets
มุมมอง 12วันที่ผ่านมา
Imaging data is typically stored within tree-structured data repositories, such as the XNAT platform used by the Australian Imaging Service. This structure reflects how the data is acquired and classified by projects, subjects, visits, etc. However, for the datasets to be statistically analysed, the data need to be arranged within data frames. Frametree provides a framework perform this mapping...
Caterina Strambio De Castillia: Data Management and Sharing for everyone
มุมมอง 23วันที่ผ่านมา
Caterina Strambio De Castillia: Data Management and Sharing for everyone: from the Bench to the Community and back again The presentation will describe my imaging scientist journey from being a scientist at the bench, to building communities to making sure that community advances are made available to all research scientists regardless of individual circumstances. As part of this presentation, ...
Adán Guerrero: Challenges and Opportunities for FAIR Image Data in Latin American Bioimaging
มุมมอง 10วันที่ผ่านมา
Adán Guerrero - Challenges and Opportunities for FAIR Image Data in Latin American Bioimaging, Insights from the Data Science for Bioimaging Working Group The Latin American Bioimaging (LABI) community faces unique challenges in achieving FAIR (Findable, Accessible, Interoperable, Reusable) principles in image data management. This presentation will explore the establishment of the Data Science...
Toshiaki Katayama: Tools for integrated FAIR data- Semantic Web/ Knowledge Graphs/ Linked Open Data
มุมมอง 7วันที่ผ่านมา
Toshiaki Katayama from the Database Center for Life Science highlighted the progress in standardizing and enhancing interoperability between life science databases, underscoring the pivotal role of annual biohackathons since 2008 in driving these efforts. The presentation was delivered by Toshiaki Katayama from Database Center for Life Science (DBCLS), Japan, during the foundingGIDE Community M...
3D bioprinted systems and their applications
มุมมอง 42วันที่ผ่านมา
3D bioprinted systems and their applications
In Vitro resources for preclinical research
มุมมอง 37วันที่ผ่านมา
In Vitro resources for preclinical research
Automatic information extraction system for zooplankton images
มุมมอง 21วันที่ผ่านมา
Automatic information extraction system for zooplankton images
Adaptive web interfaces for marine life reporting, sharing and consulting
มุมมอง 9วันที่ผ่านมา
Adaptive web interfaces for marine life reporting, sharing and consulting
Expandable multi-imaging underwater acquisition system
มุมมอง 714 วันที่ผ่านมา
Expandable multi-imaging underwater acquisition system
Advanced multi-platform Application for marine life reporting
มุมมอง 714 วันที่ผ่านมา
Advanced multi-platform Application for marine life reporting
Detecting and characterizing macro-organisms in underwater images
มุมมอง 3314 วันที่ผ่านมา
Detecting and characterizing macro-organisms in underwater images
Stefania Marcotti: Data in the wild - field notes from a core facility
มุมมอง 2914 วันที่ผ่านมา
Stefania Marcotti: Data in the wild - field notes from a core facility
How do you imagine research infrastructures in 2050?
มุมมอง 3114 วันที่ผ่านมา
How do you imagine research infrastructures in 2050?
In situ structural immunology: Protein structure determination
มุมมอง 414 วันที่ผ่านมา
In situ structural immunology: Protein structure determination
Tracing the magic bullet - Visualising engineered cell-based immunotherapies
มุมมอง 414 วันที่ผ่านมา
Tracing the magic bullet - Visualising engineered cell-based immunotherapies
Unlocking the lymphoid structures with germinal centers
มุมมอง 914 วันที่ผ่านมา
Unlocking the lymphoid structures with germinal centers
We are QPI microscopy!