Bika Open Source LIMS
Bika Open Source LIMS
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Bulk Sample Import with voice-over
Video steps are listed here, from beginning to end:
The Sample information is imported using a CSV spreadsheet format that is not friendly to complete
Copy the online Google sheet that is better formatted and can be populated from validated data ranges uploaded from the LIMS earlier
It has three parts
1. Client information
2. Batch Information
Either an existing or new Batch. The samples will be created there
3. Sample Information
Client Sample ID, Sample Date, Sample Type etc.
Followed by the Analysis Profiles and Tests requested per Sample
It is good practice to save a copy of the sheet per Client for re-use
Start with the Client
If you populated the Lookups sheet you’ll be able to select them and prevent typos
On the 2nd sheet, Lookups
Capture the lists required for the lookups, Clients, Contacts, Sample Types etc.
Capture the Client Name and ID, Contact on row 2
Capture the Batch the samples will be created in’s Title, Description and Client Batch ID
In this example we are going to create 10 samples
Increase the Sample counter in column A
Capture the Client’s Sample IDs
Capture the Sample Date and Time
Capture the Sampler, Sample Point, Sample Type and Container
Repeat for all Samples
On the green row, select the Analysis Profiles and individual tests to request for the Samples
Capture “1” in the cells where Sample IDs and their requested Analyses intersect
Save the sheet as CSV
Go to the LIMS and navigate to the Client’s Imports folder
Previous Imports are listed here
To add and Import, click [+ Bulk Import File]
Select the CSV to Import
Click [Import]
The LIMS read the file and scans it for errors and displays what it found
If there were any errors in the file they’ll be listed with a row number at the bottom of the page
The user may then navigate to the Import’s edit page to fix them (or fix the file and import it again)
When everything is in order, write the data to the database by clicking [Import] on its state drop-down
This action may take a while
The user is returned to the Import’s view page
The Import is in Imported state
He/she can navigate from here directly to the Batch
The Samples now enter standard lab workflow
มุมมอง: 477

วีดีโอ

Bika QC. Reference Samples
มุมมอง 185ปีที่แล้ว
In this Bika Open Source LIMS video, we’ll have a look at * Reference Definitions * Reference Samples * QC Analysis * Control Charts * Reference Sample Expiry Reference Samples expire and the new ones are bought from Suppliers or made up from inhouse stock. Each time a new Reference Sample is created with different expiry date and lot number etc. but similar specification For this reason Bika S...
Creating and Using Calculations
มุมมอง 190ปีที่แล้ว
Many Analysis results are calculated from dependent result values or unreported parameters like weights and factors These can all be configured in Bika by lab manager users Also see the manual page www.bikalims.org/manual/7-calculations/calculations In this video we do maths calculations first and then return to illustrate each of the more advanced features, using simple examples * Total Hardne...
Creating and using Worksheet Templates to automate worksheet creation
มุมมอง 503ปีที่แล้ว
Creating recurring Worksheets including QC samples can be automated using Worksheet Templates Here is a simplified example of such a Worksheet Control and Blank Samples Routine Samples Duplicates This worksheet can be manually built up using the Add tabs on the top of the page An easier way is to configure a worksheet Template that defines worksheets of this type Navigate to Worksheet Templates...
Bulk Sample Import
มุมมอง 644ปีที่แล้ว
The Sample information is imported using a CSV spreadsheet format that is not friendly to complete Copy the online Google sheet that is better formatted and can be populated from validated data ranges uploaded from the LIMS earlier It has three parts 1. Client information 2. Batch Information Either an existing or new Batch. The samples will be created there 3. Sample Information Client Sample ...
Bika Senaite Instrument Interfacing
มุมมอง 1.8K2 ปีที่แล้ว
LIMS with Geochemistry configuration for mining and exploration with gratitude by Geoangol, Luanda, currently implementing Bika Fire Assay www.geoangol.com/ Storyboard: The video illustrates how Bika interfaces with laboratory analysers exchanging Sample IDs and eventually their results in spreadsheet format It will show Preparing the Samples in a LIMS worksheet Exporting the Sample IDs and pos...
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มุมมอง 1.7K3 ปีที่แล้ว
Reviewing Worksheet results for Verification Retract and Retest dubious results Verify Worksheets Publish Sample Certificate of Analysis The Bika LIMS Collective www.bikalims.org
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มุมมอง 2.6K3 ปีที่แล้ว
The Video reviews existing Worksheets and the Worksheet Templates used to create them in Bika Open Source LIMS A Template is then used to create a new Worksheet, testing for food additives, 'E numbers', and Reference samples included for quality control Results are capture manually and the Worksheet readied for Verification. Results OOR, Out of Range' are highlighted The Bika LIMS Collective ww...
Bika Senaite Open Source LIMS. Receiving and Labelling Samples. Sample Rejection and Cancellation
มุมมอง 3.1K4 ปีที่แล้ว
In this video, we Receive Samples earlier registered remotely at the lab, and checking them in, where after they are made available for analysis A lab clerk identifies the Samples, finds them in the system on the Client's 'Sample Due' list, and transition them to Received state. Bika prints the Samples' barcoded labels and returns the user to the Sample List - these Samples are now in Received ...
Bika Senaite Open Source LIMS. Batched Sample registration
มุมมอง 5K4 ปีที่แล้ว
This video illustrates Batched Sample registration in Bika (and Senaite) Open Source LIMS. In a follow-up video, Samples will be processed further, using LIMS worksheets A simple Use Case is followed, with Sampling and Preservation workflows are disabled, and all actions are by lab staff at reception and labelled In the video, the user navigates to Batches, press Add Batch, complete its header ...
Vintage stills from Bika Training 2014 in Pringle Bay, South Africa
มุมมอง 1.8K9 ปีที่แล้ว
Lectures at the University of the Western Cape, sponsored by the SA Bioinformatics Institute, followed by a week of workshops in Bika (Code) House in Pringle Bay Visits to the Cape Point, Table Mountain and Harold Porter nature parks, the Betty's Bay penguin colony of Linux tux dressed birds:) Visit to Stellenbosch University geochemistry labs, nights out, meals around the fire