วีดีโอ

Plz can u tell me this chimera version cos my poc is in chinera x 1.8 version is not support these file

Great turorial

Thanks for creating this video, very informative.

md

good work

For 3D confrmer which website u useing

This is a useful video on how to create a structure-based pharmacophore th-cam.com/video/zMeIBuMvKLU/w-d-xo.html

When I did this with my protein, I got total 10 cavitites with MS volume of more than 100 and 11 cavities with volume less than 50. if I have to perform docking of my ligand with the cavity, how many cavitites should I choose?

So much so so😤

FROM BBAU

How to save the movie

Thank you so much. highly recommended

Moore Matthew Walker David Thompson Amy

Hello! Thank you for you video. Do you know if chimera can generate a 2D image of the interactions?

Your image is so much shinier than mine and I can't figure out what I need to do. I have set the lighting and effects to full (soft is no better), and it just looks bad.

This webinar and narrator are understated. This is a very helpful step-by-step guided tour of ZINCPharmer. I will try to do this with some help from a student / colleague.

Hello sir , I have multiple chain protein . In the model loop i can only fix one chain but my protein missing residues in all chains now how to do them all togather . And when i save the modeled file . I can only see the chain which was modeled rest chain get removed in new saved file

great video, thanks! How to add scale bar for a 3D protein structure, given that I don't know the size of the protein in angstrom or nanometers?

Command not working

thank you

how did you even create .xtc file which has a lot of frames? I am having issues with making multiple frames for movie making. A lot of videos show just load .xtc file but nobody even mentioned how to create .xtc file where you can have tons of frame

I always get problem when showing the surface representation. It always ask me about the split command

PLEASE we need that

Toturial bhi dedo

one click is missing when you showed the beads over 0:501 frames.. i tried in my case no such beads spread over binding pocket site?... what did i missed however i followed your steps? secondly i want to ask that how to make h.bond graph between ligand and particular residue. for example TYR81 and rename unk? can you explain in detail. and thank you this video was of great help.

Hi! I love it, and I have some questions. Another video you mention that we need to create a file with all orientations that could has our ligand, so what is the next step before the virtual screening? Thanks!

Sir can you please provide me key

I have one question. Will you reply?

I downloaded VMD after trying for several hours and im not even able to see the main file window.... this is so sad

Thank you so much

Hi Sir can l get covalent bond (not only reversible bonds ) interaction between the legand and protein by this software

well explained..very useful..I have to find cavity between 3 chains of my protein, When I concatenate the chain files and give it in pdb format to castp, the job never seems to get completed..can you help me?

Why 4 anstromes? Why not 5? 3?

How to create npt. gro file?

Do you know a way to calculate the RMSD of the complex?

Can we do like Discovery studio and visualise the interaction 2D diagram ? PLEASE answer

how you have created npt.gro file?

How can I find the active residues in a binding pocket?

Hello sir can u please tell me it is necessary to save all models in a file or is it ok if we save only single model

Very useful information for beginners. Thank you!

Nice one! Thank you

Hello sir Small molecules drawn using pubchem sketcher can be used for docking ?

Thank you. Can you please write once again how to save the overlap file

How did the ligand get there

Can you please tell me if there are any free softwares for receptor based pharmacophore modelling and virtual screening??

Simulation time?

Good

if there is no pdb structure of our wild and mutant protein, then what we will do ?

nice explanation sir

Sir is there any scope for training under Jeevika Bio ?