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IMB Microscopy
Australia
เข้าร่วมเมื่อ 9 ต.ค. 2016
The microscopy facility at the Institute for Molecular Bioscience at the University of Queensland supports over 180 researchers from 27 research groups investigating such areas as childhood and developmental diseases, host-pathogen interactions, and mechanobiology. With five point-scanning confocal microscopes, three deconvolution microscopes, a spinning disk confocal, and several wide field and stereo microscopes, along with image analysis workstations and three knowledgeable microscopists we offer a world-class facility to our scientists.
On this channel we hope to provide tutorials and suggestions in how to best acquire, process, and analyse images from the facility's microscopes.
On this channel we hope to provide tutorials and suggestions in how to best acquire, process, and analyse images from the facility's microscopes.
Making figures & files for presentations - Part 4 – Composing your figures
This is video 4/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland.
This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/
Topics for this video include:
-Software to use making your figures
-Introduction to Adobe Illustrator
-Getting the images right (rotate, crop, adjusting brightness, scale bars overlays)
-BioRender Intro
This workshop was presented by Dr Nicholas Condon and Dr David Knight.
This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/
Topics for this video include:
-Software to use making your figures
-Introduction to Adobe Illustrator
-Getting the images right (rotate, crop, adjusting brightness, scale bars overlays)
-BioRender Intro
This workshop was presented by Dr Nicholas Condon and Dr David Knight.
มุมมอง: 32
วีดีโอ
Making figures & files for presentations - Part 3 - Planning your figures
มุมมอง 14หลายเดือนก่อน
This is video 3/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Referring to published checklists -Create a data structure -Find the author instructions -Layouts and ar...
Making figures & files for presentations - Part 7 - Adobe Illustrator - Getting Started
มุมมอง 12หลายเดือนก่อน
This is video 7/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Which Adobe program to use? -Setting up your workspace This workshop was presented by Dr Nicholas Condon...
Making figures & files for presentations - Part 12 - Adobe Illustrator - Creating illustrations
มุมมอง 7หลายเดือนก่อน
This is video 12/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Line/Pen tools -2D Shape Tools -Selection Tools -Editing shapes and paths -Transforming shapes -Working...
Making figures & files for presentations - Part 5 - Composing a video
มุมมอง 12หลายเดือนก่อน
This is video 5/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Important considerations for a video -Considerations (overlays, framerates, formats & compression) -Hand...
Making figures & files for presentations - Part 11 - Adobe Illustrator - Using Templates
มุมมอง 5หลายเดือนก่อน
This is video 11/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Why use templates -Working with templates -Setting up your template This workshop was presented by Dr N...
Making figures & files for presentations - Part 10 -Adobe Illustrator Working with Multiple Elements
มุมมอง 12หลายเดือนก่อน
This is video 10/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Working with graphs and charts -Aligning and distributing objects -Working with layers This workshop wa...
Making figures & files for presentations - Part 8 - Adobe Illustrator - Working with Images
มุมมอง 6หลายเดือนก่อน
This is video 8/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Importing figures from other applications -Working with Images -Using clipping masks to reshape image ou...
Making figures & files for presentations - Part 6 - Other Important Considerations
มุมมอง 12หลายเดือนก่อน
This is video 6/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Figure Legends -Materials and Methods Sections -Acknowledgements This workshop was presented by Dr Nicho...
Making figures & files for presentations - Part 2 - What not to do
มุมมอง 11หลายเดือนก่อน
This is video 2/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Examples of bad figures -Examples of not allowed manipulations to images This workshop was presented by ...
Making figures & files for presentations - Part 1 - What makes a good figure?
มุมมอง 21หลายเดือนก่อน
This is video 1/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Structure of the workshop -Anatomy of a figure -Considerations for good figures (less clutter, text, gra...
Making figures & files for presentations - Part 9 - Adobe Illustrator - Working with Text & Colours
มุมมอง 4หลายเดือนก่อน
This is video 9/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Character styles and libraries -Working with Fonts -Colours: Stroke & Fill -Using colour themes and swat...
Introduction to Macro Writing in Fiji | Part 7 - Tips and Tricks
มุมมอง 312 หลายเดือนก่อน
This video is number 10 of a 10 video series covering a workshop entitled Introduction to Macro Writing in Fiji which ran at The University of Queensland in August 2024. This workshop series has associated materials (PDFs of slides, exercise files, example macros) available on the OSF Repository here: osf.io/ewyjm/ Topics for this video include: • Commenting your code • Pseudo coding • Debuggin...
Introduction to Macro Writing in Fiji | Part 6c - Structuring your macros (Getting measurements)
มุมมอง 332 หลายเดือนก่อน
This video is number 9 of a 10 video series covering a workshop entitled Introduction to Macro Writing in Fiji which ran at The University of Queensland in August 2024. This workshop series has associated materials (PDFs of slides, exercise files, example macros) available on the OSF Repository here: osf.io/ewyjm/ Topics for this video include: • ROI Manager • Scraping the results table • Using...
Introduction to Macro Writing in Fiji | Part 6b - Structuring your macros (Script Shell Generator)
มุมมอง 132 หลายเดือนก่อน
This video is number 8 of a 10 video series covering a workshop entitled Introduction to Macro Writing in Fiji which ran at The University of Queensland in August 2024. This workshop series has associated materials (PDFs of slides, exercise files, example macros) available on the OSF Repository here: osf.io/ewyjm/ Topics for this video include: • Script shell generator • Printing to a file and ...
Introduction to Macro Writing in Fiji | Part 6a - Structuring your macros
มุมมอง 362 หลายเดือนก่อน
Introduction to Macro Writing in Fiji | Part 6a - Structuring your macros
Introduction to Macro Writing in Fiji | Part 5 - Scripting in Fiji
มุมมอง 462 หลายเดือนก่อน
Introduction to Macro Writing in Fiji | Part 5 - Scripting in Fiji
Introduction to Macro Writing in Fiji | Part 4 - Programming Basics - Conditional code blocks
มุมมอง 322 หลายเดือนก่อน
Introduction to Macro Writing in Fiji | Part 4 - Programming Basics - Conditional code blocks
Introduction to Macro Writing in Fiji | Part 3b - Operations
มุมมอง 202 หลายเดือนก่อน
Introduction to Macro Writing in Fiji | Part 3b - Operations
Introduction to Macro Writing in Fiji | Part 3 - Getting started in Fiji
มุมมอง 242 หลายเดือนก่อน
Introduction to Macro Writing in Fiji | Part 3 - Getting started in Fiji
Introduction to Macro Writing in Fiji | Part 2 - Essential knowledge
มุมมอง 332 หลายเดือนก่อน
Introduction to Macro Writing in Fiji | Part 2 - Essential knowledge
Introduction to Macro Writing in Fiji | Part 1 - Overview
มุมมอง 802 หลายเดือนก่อน
Introduction to Macro Writing in Fiji | Part 1 - Overview
FIJI Essentials Workshop May 2024 - Part 6 - Creating analysis pipelines
มุมมอง 716 หลายเดือนก่อน
FIJI Essentials Workshop May 2024 - Part 6 - Creating analysis pipelines
FIJI Essentials Workshop May 2024 - Part 5 - Getting ready to publish
มุมมอง 516 หลายเดือนก่อน
FIJI Essentials Workshop May 2024 - Part 5 - Getting ready to publish
FIJI Essentials Workshop May 2024 - Part 4 Image transformations
มุมมอง 586 หลายเดือนก่อน
FIJI Essentials Workshop May 2024 - Part 4 Image transformations
FIJI Essentials Workshop May 2024 - Part 3 Adjusting visualisation parameters
มุมมอง 676 หลายเดือนก่อน
FIJI Essentials Workshop May 2024 - Part 3 Adjusting visualisation parameters
FIJI Essentials Workshop May 2024 - Part 2 Opening images
มุมมอง 746 หลายเดือนก่อน
FIJI Essentials Workshop May 2024 - Part 2 Opening images
FIJI Essentials Workshop May 2024 - Part 1 Introduction
มุมมอง 1156 หลายเดือนก่อน
FIJI Essentials Workshop May 2024 - Part 1 Introduction
Thanks for sharing. Can you please make a video on how to get composite using z-stacks
Thank you! very useful.
I have pics for MCF 7 cells in vitro stained by Phalloidin 488, how I can analyze them please? 😢
why do we have to converrt the images from index colour image to gray scale image, i mean is it a general standard for publication??
Hi, I am working on phases of polymer blends using Atomic force microscopy. Please upload a video about how to filter the phase image so that we can easily differentiate phases of the blend..
Quick question: why do you have to convert the images to 8-bit, instead of working directly with the separated channels, which are already in red-green-blue?. I usually just merge the channels without need to covert the images to 8-bit before.
😮😢😮😮😮😮😮😢
Sir will you help me for some image processing, related to trichome (hair like structure on leaf) counting ? I am trying but not getting proper results.
Hello sir,I want to use this software to measure the width of the cracks of the reinforced concrete beams, if possible to apply a grid (perpendicular to the crack) on the image this grid to determine the width and thank you in advance please idea me it's urgent.
why you have first change the cokor to gray scale?? n on final click it became automatically colored one?
Please do video of how to scale images using image j
Why is the merged image saved in tiff?
Very good tute
💚| complete this series plz
Super helpful! Thank you
the voice and tone sounds like the listening test in TOEFL
Could you please tell me how to use pixel values at selected points in the image as numeric overlay?
Great!
Hi , I have a query regarding how to process the confocal images of cancerous cells after staining them with DAPI and mitotracker cmx ros? I want to quantify fragmented , intermediate and elongated mitochondrial morphologies. Please reach me at prayees26@gmail.com. thanks
Can you please show how to quantify signal intensity inside and outside nucleus and how to analyse colocalisation of two protein
Really well explained. Thanks
I need to find fibers of a filament in the series of images. each image might have hundreds or thousands of these fibers and I have hundreds of images. What is the systematic approach that can find these fibers in the image?
How can I ask software to segment part of an image? Is software able to detect the edges of a cell image from the background?
Try this article. it is very useful but you need to download the plug - ins required for the segmentation www.jstage.jst.go.jp/article/plmorphol/29/1/29_15/_article/-char/ja Copy the title and search for the English version. It's available in Pdf format
Thanks. One more question: I need to find fibers of a filament in the series of images. each image might have hundreds or thousands of these fibers and I have hundreds of images. What is the systematic approach that can find these fibers in the image?
@@zeynabmousavi1736 it depends on what you are trying to investigate in the first place. For instance, in the above article the systematic approach is based on 4 parameters of the microfilaments. According to your test you must decide what the precise effect that you are suspecting to observe. Then you will be able to make analysis for the whole area of your images or for certain fields of your choice. Since you have plenty of them, then you must be comparing something against another. The values you get from the image analysis software can be translated into readable data using a statistical test of your preference.
@@andromeda3780 Lets explain in different way: I have fibers of the cytoskleton scattered inside an image. There are hundreds of those fibers in the image. Assuming that fibers are linear, I want the software to find all those fibers and find a specific characteristics of those fibers (for example find the angle between each fiber a vertical line in the image. So I would extract hundreds of angles from one image and I want to repeat this with several other images that I have. Also I might need to section an image and do the above analysis on a section of the image. Any recommendation in this case would be appreciated.
@@zeynabmousavi1736 in this case try this article journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005063 But any way the approach is the same whether you have one image, section of an image or hundreds of them. You must know how to run the analysis using software.
Can i find any video about the calculation of Intensity and related things which are required to be kept in mind while quantifying intensity and comparing in different biological replicates? will love to see if there is any. i just found one such video here on youtube. which lacks most of things
Could you please upload how to process a large-sized video in imageJ
Good to know about this video; you have presented very clearly. Would love to see videos for understanding co-localization analyses at Image J. Thank you !
Hi, you may want to check CoLocalizer apps to quantify colocalization on Mac and iPad: th-cam.com/users/CoLocalizationRS