- 6
- 20 234
Rodrigo Baptista
เข้าร่วมเมื่อ 26 ก.ย. 2006
Entrevista IGEM UFMG_BRAZIL no canal BHNews
Entrevista realizada no dia 25/06/2015, no canal BHNews, com quatro integrantes da equipe IGEM UFMG_BRAZIL.
มุมมอง: 40
วีดีโอ
Basic SNPeff Tutorial (using custom database)
มุมมอง 8K4 ปีที่แล้ว
Basic tutorial for making a custom database and annotate a VCF file. using SNPEff. This example was made for an REU student from my lab using the UGA sapelo2 cluster environment. For more information: rpbaptista.weebly.com/ SNPEff manual available: snpeff.sourceforge.net/SnpEff_manual.html#run
Could you please tell how did you add ids to your vcf file in a new column ? eg. CPATCC_0036010 ?
Hi. Great tutorial. can you tell me how to use a different codon table for the new database?
when looking at snpeff annotation many times there are different entries for the same position. When annotating genes. how do you chose in between them ?
use SNPsift to generate the table with the feature information and for the featureID use the index 0 (example: "ANN[0].FEATUREID". It will do the cleaning trick =)
This was extremely helpful! Thank you very much for making this.
This is gold. Thank you very much!
This video has so many levels of joy for people just starting with VCF filtering.
Well explained. Thank you so much for this !
Great video. Its strange that snpeff showed error while building the database when the .fa and .gff files names were other than sequences.fa and genes.gff. But when I changed the names then everything worked fine. Just curious why this happened? Any idea?
There are two import processes. If you are using the method showed here (directory with the genome name, in this case cpar_ATCC) then you need to use the specified file names. I.e. sequences.fa and genes.gtf.
You saved my day!!! Thanks for the tutorial.
This is an awesome, really helpful tutorial. Thank you for making it!
Your tutorial makes my work super easy thanks a lot.
Thank you!
weon la wea pal pene la cago
great! I liked it
Cool Bullion Cover check this joe and simon sing GOODBYE I DIE by NIKOLA SARCEVIC
tens é de treinar esse inglês.. ta com um acento muito mau!! heehhe!
estudio B do minueto!
man see our cover, search: (No cigar-left hand cascais) and tell uss what you think
ya, the lead singer definatly sux balls. Get a new one and start trying to make music instead of trying to look good making music and maybe you'll do better.
jaajaja comico
ora ta chida
that's garbage it's all fuckin wrong, come on u should be ashamed for doin that
keep it up and don't hold anything back
valeu dimais cara =)
like it
legal msm... só ficou paia o vocalista levantando os dedinhos.... arrumem um pandeiro pra ele tocar hehe brincadeira
jah estamos com mais videos hj ou amanha devemos colocar mais na rede =)
awesome!! adorei caraaaa tens que fazer mais videos eu realmente adorei! cara tu tem que pensar mais alto! isso é so o começo vc tem que pensar no seu futuro!
Doidera total! É isso aí Softcore, muito sucesso para vocês, quebrem tudo!!! Lande & FACECORE