OLISSIPO Project
OLISSIPO Project
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Samraat Pawar | Workshop Two for a Tango - 4th Edition
Workshop Metabolism and mathematical models: Two for a tango | 4th Edition
November 19-20, 2024 | ONLINE WORKSHOP
Samraat Pawar, Imperial College London, UK
Title talk: Thermal-metabolic constraints on complex ecosystem dynamics (AKA how can we *really* engineer microbiomes?).
Short abstract: Metabolically-driven interactions between biological species in any local ecosystem typically form large, complex networks that generate interesting and often unpredictable system dynamics. A new Mount Everest for theoretical biology, with a wide range of applications, is the development of methods to control and engineer these complex, nonlinear systems. To this end, we need to understand a fundamental problem that has occupied Biologists, and in particular, Ecologists, for almost two centuries: how do these seemingly improbable systems assemble and persist in (an increasingly) fluctuating and uncertain real world? In this talk, I will outline the challenge, and present recent progress towards the goal of engineering microbiomes under a ubiquitous source of environmental fluctuations: temperature.
This workshop is being organised in the context of two projects, both with the Inria European Team Erable. One of the projects involves a partnership with the University of São Paulo (USP), in São Paulo, Brazil, more specifically the Institute of Mathematics and Statistics (IME) and the Institute of Biomedical Sciences - Inria Associated Team Capoeira - and the other involves the Inesc-ID/IST in Portugal, ETH in Zürich and EMBL in Heidelberg - H2020 Twinning Project Olissipo.
มุมมอง: 23

วีดีโอ

Jürgen Zanghellini | Workshop Two for a Tango - 4th Edition
มุมมอง 716 ชั่วโมงที่ผ่านมา
Workshop Metabolism and mathematical models: Two for a tango | 4th Edition November 19-20, 2024 | ONLINE WORKSHOP Jürgen Zanghellini, University of Vienna, Austria Title talk: Boosting biotechnological production process with constraint-based process modeling. Short abstract: Biotechnological processes for producing high-value compounds are often inefficient and costly. Addressing these challen...
Ross Carlson | Workshop Two for a Tango - 4th Edition
มุมมอง 2616 ชั่วโมงที่ผ่านมา
Workshop Metabolism and mathematical models: Two for a tango | 4th Edition November 19-20, 2024 | ONLINE WORKSHOP Ross Carlson, Montana State University, USA Title talk: Cell geometry and membrane protein crowding are major constraints on bacterial phenotype including growth rate, respiration efficiency, and maintenance energy generation. Short abstract: Bacterial cell geometry is highly regula...
John Kececioglu | Workshop Two for a Tango - 4th Edition
มุมมอง 1216 ชั่วโมงที่ผ่านมา
Workshop Metabolism and mathematical models: Two for a tango | 4th Edition November 19-20, 2024 | ONLINE WORKSHOP John Kececioglu (The University of Arizona, USA) Title talk: Inferring pathways in metabolic networks via optimal factories and hyperpaths. Short abstract: Fundamental to systems and synthetic biology is the task of inferring pathways of reactions in metabolic networks. Two key mode...
FICA Festival - Das Moléculas à Computação: Vem Descobrir a Biologia em Modo Digital
มุมมอง 262 หลายเดือนก่อน
Between 12-13th October, 2022, the OLISSIPO team was present at the FICA Festival in Porto Salvo, Lisbon. This video, recorded by the ESR José Basílio, represents the education module taught during this event to more than 100 students from basic schools.
Vassily Hatzimanikatis | Workshop Two for a Tango - 3rd Edition
มุมมอง 903 หลายเดือนก่อน
Workshop Metabolism and mathematical models: Two for a tango | 3rd Edition November 14-15, 2022 | ONLINE WORKSHOP Vassily Hatzimanikatis (École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland) Title talk: One method does not fit all: A Hierarchy of Modelling and Computational Methods for Metabolic Analysis and Design. Short abstract: Mathematical models are used in all fields o...
OLISSIPO Twin Seminar IV - Algorithms and software for phylogenetic analysis (Prof. Daniel Huson)
มุมมอง 1167 หลายเดือนก่อน
The OLISSIPO Twin Seminars will contribute to disseminate the scientific work and expertise of INESC-ID and all the Consortium that includes Inria, ETH Zürich and EMBL. These seminars will comprise two short presentations, one researcher from Lisbon and one from a twin international institution working on similar topics in Computational Biology. The seminars will be opened to everyone intereste...
OLISSIPO Invited Lecture - Prof. Jens Stoye (Bielefeld University)
มุมมอง 357 หลายเดือนก่อน
The OLISSIPO Seminars will contribute to disseminate the scientific work conducted in Computational Biology. The seminars will be opened to everyone interested and will include a discussion to further promote the interaction between all the participants. Jens Stoye 22th April 2024 Title: Bioinformatics Infrastructure in Bielefeld and in Germany. Abstract: Universal Sequence Maps (USM) are an it...
OLISSIPO Twin Seminar IV - Algorithms and software for phylogenetic analysis (Prof. Cátia Vaz)
มุมมอง 487 หลายเดือนก่อน
The OLISSIPO Twin Seminars will contribute to disseminate the scientific work and expertise of INESC-ID and all the Consortium that includes Inria, ETH Zürich and EMBL. These seminars will comprise two short presentations, one researcher from Lisbon and one from a twin international institution working on similar topics in Computational Biology. The seminars will be opened to everyone intereste...
OLISSIPO Invited Lecture - Prof. Dan Gusfield (University of California)
มุมมอง 12510 หลายเดือนก่อน
The OLISSIPO Seminars will contribute to disseminate the scientific work conducted in Computational Biology. The seminars will be opened to everyone interested and will include a discussion to further promote the interaction between all the participants. Dan Gusfield 15h February 2024 Title: Integer Linear Programming and SAT-Solving in Computational Biology. Abstract: In this talk I will expla...
OLISSIPO Invited Lecture - Prof. Jonas Almeida (National Cancer Institute)
มุมมอง 10210 หลายเดือนก่อน
The OLISSIPO Seminars will contribute to disseminate the scientific work conducted in Computational Biology. The seminars will be opened to everyone interested and will include a discussion to further promote the interaction between all the participants. Jonas Almeida 14th February 2024 Title: Universal Sequence Maps, from biological sequences to numbers and back. Abstract: Universal Sequence M...
Steffen Klamt | Workshop Two for a Tango - 3rd Edition
มุมมอง 31ปีที่แล้ว
Workshop Metabolism and mathematical models: Two for a tango | 3rd Edition November 14-15, 2022 | ONLINE WORKSHOP Steffen Klamt (Max Planck Institute for Dynamics of Complex Technical Systems, Magdeburg, Germany) Title talk: Network-wide thermodynamic constraints shape NAD(P)H cofactor specificity of biochemical reactions. Short abstract: NADH and NADPH are redox cofactors coexisting in all liv...
Laura-Isobel McCall | Workshop Two for a Tango - 3rd Edition
มุมมอง 48ปีที่แล้ว
Workshop Metabolism and mathematical models: Two for a tango | 3rd Edition November 14-15, 2022 | ONLINE WORKSHOP Laura-Isobel McCall (San Diego State University, US) Title talk: Metabolism in a 3D environment: chemical cartography of Chagas disease. Short abstract: Chemical cartography is the spatial analysis of metabolic changes in tissue. In this talk, I will discuss how chemical cartography...
Igor Cestari | Workshop Two for a Tango - 3rd Edition
มุมมอง 109ปีที่แล้ว
Workshop Metabolism and mathematical models: Two for a tango | 3rd Edition November 14-15, 2022 | ONLINE WORKSHOP Igor Cestari (Institute of Parasitology, McGill University, Montréal, Canada) Title talk: Nuclear signaling and antigenic switching in trypanosomes. This workshop was organised in the context of two projects, both with the Inria European Team Erable. One of the projects involves a p...
Barbara Bakker | Workshop Two for a Tango - 3rd Edition
มุมมอง 62ปีที่แล้ว
Workshop Metabolism and mathematical models: Two for a tango | 3rd Edition November 14-15, 2022 | ONLINE WORKSHOP Barbara Bakker (Faculty of Medical Sciences, University of Groningen, The Netherlands) Title talk: Digital twins: a personalised systems medicine approach for metabolic disease. Short abstract: Each patient is unique. Even siblings with the same pathogenic genotype may differ vastly...
Jörg Stelling | Workshop Two for a Tango - 2nd Edition
มุมมอง 1582 ปีที่แล้ว
Jörg Stelling | Workshop Two for a Tango - 2nd Edition
Carlos Robello | Workshop Two for a Tango - 2nd Edition
มุมมอง 1672 ปีที่แล้ว
Carlos Robello | Workshop Two for a Tango - 2nd Edition
Miguel Rocha | Workshop Two for a Tango - 2nd Edition
มุมมอง 852 ปีที่แล้ว
Miguel Rocha | Workshop Two for a Tango - 2nd Edition
Pedro Mendes | Workshop Two for a Tango - 2nd Edition
มุมมอง 5202 ปีที่แล้ว
Pedro Mendes | Workshop Two for a Tango - 2nd Edition
Joshua Chan | Workshop Two for a Tango - 2nd Edition
มุมมอง 542 ปีที่แล้ว
Joshua Chan | Workshop Two for a Tango - 2nd Edition
Emma Saavedra | Workshop Two for a Tango - 2nd Edition
มุมมอง 442 ปีที่แล้ว
Emma Saavedra | Workshop Two for a Tango - 2nd Edition
OLISSIPO Twin Seminar III - Protein driven ML and network approaches (Prof. Emanuel Gonçalves)
มุมมอง 1332 ปีที่แล้ว
OLISSIPO Twin Seminar III - Protein driven ML and network approaches (Prof. Emanuel Gonçalves)
OLISSIPO Twin Seminar III - Protein driven ML and network approaches (Prof. Pedro Beltrao)
มุมมอง 1172 ปีที่แล้ว
OLISSIPO Twin Seminar III - Protein driven ML and network approaches (Prof. Pedro Beltrao)
OLISSIPO - Fostering Computational Biology Research and Innovation in Lisbon (INESC-ID)
มุมมอง 3622 ปีที่แล้ว
OLISSIPO - Fostering Computational Biology Research and Innovation in Lisbon (INESC-ID)
Frédéric Bringaud | Workshop Metabolism and mathematical models: Two for a tango
มุมมอง 483 ปีที่แล้ว
Frédéric Bringaud | Workshop Metabolism and mathematical models: Two for a tango
Daniel Merkle | Workshop Metabolism and mathematical models: Two for a tango
มุมมอง 1133 ปีที่แล้ว
Daniel Merkle | Workshop Metabolism and mathematical models: Two for a tango
Alena Ziková | Workshop Metabolism and mathematical models: Two for a tango
มุมมอง 663 ปีที่แล้ว
Alena Ziková | Workshop Metabolism and mathematical models: Two for a tango
Michael Barrett | Workshop Metabolism and mathematical models: Two for a tango
มุมมอง 723 ปีที่แล้ว
Michael Barrett | Workshop Metabolism and mathematical models: Two for a tango
Fabien Jourdan | Workshop Metabolism and mathematical models: Two for a tango
มุมมอง 913 ปีที่แล้ว
Fabien Jourdan | Workshop Metabolism and mathematical models: Two for a tango
Daniel Segrè | Workshop Metabolism and mathematical models: Two for a tango
มุมมอง 1393 ปีที่แล้ว
Daniel Segrè | Workshop Metabolism and mathematical models: Two for a tango

ความคิดเห็น

  • @weixie4943
    @weixie4943 2 หลายเดือนก่อน

    Thank you for the great presentation. I was attracted to COPASI by the (temporally) dynamic network visualization feature and am planning to use the software for my project. I came across this video after installing. Truly excellent, helpful introduction to the software before diving in!