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UC Merced SCIF Stem Cell Instrumentation Foundry
เข้าร่วมเมื่อ 9 พ.ย. 2011
UC Merced's Stem Cell Instrumentation Foundry is a shared resource laboratory that provides training, expertise, and access to flow cytometers, cell sorters, advanced light microscopes, and a cleanroom for nanofabrication. It is available both to internal UC Merced researchers as well as external users.
Tutorial on tSNE and FlowSOM Step-by-Step tool usage in FlowJo V10
This video describes how use tSNE and FlowSOM tools in FlowJo. It presents a step by step workflow on how to compare samples using these high dimensional analysis tools.
Sample files used and a step-by-step guide can be downloaded here:
ucmerced.box.com/s/e4i0vvrmrqch6i6798kke7unlwca8czq
Sample files used and a step-by-step guide can be downloaded here:
ucmerced.box.com/s/e4i0vvrmrqch6i6798kke7unlwca8czq
มุมมอง: 35 847
วีดีโอ
Daily startup and CST on BD LSR II Cytometer
มุมมอง 7K4 ปีที่แล้ว
This video describes the startup and performance check of the BD LSR II flow cytometer. This applies to weekend users.
Converting Text to a FCS File and Viewing in FlowJo
มุมมอง 2.9K5 ปีที่แล้ว
This video describes how to take an image of text and convert it into an FCS file for an interesting effect.
Nikon confocal startup
มุมมอง 4.2K6 ปีที่แล้ว
Simple startup of the Nikon confocal microscope located in SE1 379.
FACS Aria Fluidic Sensor Bypass
มุมมอง 7586 ปีที่แล้ว
This video describes how to bypass a FACS Aria fluidic sensor that is malfunctioning. This is critical because certain functions will not work if the instrument reads that tanks are empty. These parts are expensive to replace, and not particularly useful or necessary in my opinion.
Compensation of a 7 color panel on the BD LSR II
มุมมอง 107K7 ปีที่แล้ว
This video describes the process of manual and auto compensation in BD FACSDiva on the LSR II.
BD FACS Aria startup procedure UC Merced
มุมมอง 33K7 ปีที่แล้ว
This video shows how to set up a FACS Aria for sorting, which includes performing fluidics startup, setting up the stream, CS&T calibration, Accudrop delay, and setting side stream trajectories.
Dealing with a Clog on the BD LSR II Flow Cytometer
มุมมอง 9K7 ปีที่แล้ว
This video describes the potential causes of clogs and sample uptake issues and provides some methods to remedy them.
Refilling Sheath Tank and Emptying Waste on BD LSR II Flow Cytometer
มุมมอง 7K7 ปีที่แล้ว
This video describes filling the sheath tank and emptying the waste on the LSR II flow cytometer in the UC Merced Stem Cell Instrumentation Foundry (SCIF)
Running a Basic 2 color Flow Cytometry Experiment in BD FACS Diva
มุมมอง 142K7 ปีที่แล้ว
This video describes how to set up an experiment in FACS Diva version 8.0 on an LSR II flow cytometer.
I can't say enough, THANK YOU SO VERY MUCH for this!!!!! FANTASTIC video and explanation
I can not see tSNE plot option when I open the FLOWSOM window, I don't know what I am missing. Can anyone help?
Very nice video and clearly explained the basic operation of FACSDiva. Though I got trained by our core facility, your video made me less frustrated for learning to use this complex machine and software.
This is so far the best video I have seen on FACS DIVA to set an experiment, to set controls, and to resolve different populations
Man, you deserve to earn $150 for every full video watched. I literally took a 2 hours training on Flow Cytometry yesterday ($75 an hour, paid by the lab though) from some super speed instructor who would not wait for me to take notes even and learned literally nothing. As soon as you started explaining what all those windows were, I knew your video is going to be great. This must be the most beautifully explained video for flow cytometry on the internet. Thank you man, I wasted my lab's money yesterday and I am learning from you today. I will watch your next video on compensation too.
Very nice video! This is really helpful! Thanks a lot
thank you so much for good demonstration!!! Extremely helpful!!!
Great video!
very well explained...thank you so much
Very nice video. It was quite helpful. Thanks for sharing :)
Thank you for the video. Very helpful. I have a question: I ran a cancer patient tumor infiltrating lymphocytes sample with NK cells BV786 for single color control of my compensation panel, the positive and negative signals did not separate very well. How to define the positive peak for this kind of situation? Thanks!
Thank you so much for this tutorial! Really well explained and easy to follow!
Thank you soo very much! I have been searching forba clear cut explanation that isnt just someone explaining the theory.
Thank you for this really good tutorial :)
The best video for flow cytometry experiment found ever
Thank you!!!!!
Clear explannation
Excellent demo! Extremely helpful, thanks for sharing this video!
Excellent presentation. It is clear, concise and engaging. I truly appreciate your willingness to share your expertise.
Send some traditional pigs from ur country i need to genes testing purpose
Can u tell this software name which is used by this machine
Urgently
Well done, David. Sometimes it's easier just to manually check your tanks as well!!
Helpful to me
Did you perform automatic compensation before that or is it possible to set up a panel directly like that ? I suppose that automatic compensation is needed when you also need to titrate antibodies and decide voltages. By the way the a automatic process is the only way to tell the program about negative controls right ?
Awesome video! Please do more videos like this one; it's such great tutorial material. Thank you!
Thank you for being much more helpful than anyone in my lab or institution. Much appreciated 🙏
😀Very useful. Thanks,
Many Thanks
video quality is extremely poor so sad
Thank you so much! This has been really helpful :) It was easy to follow. And I like that you explained the individual parts (tsne, FlowSOM) before showing the whole process merged together.
Lovely presentation for the flow cytometry. It really helped me a lot. Many thanks.
Thank you for the video ! This is very informative!!
Thanks a lot! Very clearly explained...
Please have more videos that walk us through as beginners how we use a cell sorter like Aria in cell analysis. This is, by far, the most detailed and best tutorial video I have ever watched on this instrument. Very thorough and detailed.
Do you know where we can get a user manual for FacsAria, canto, lyric and LSR?
Please make more videos. They are very detailed and very well explained. Thank you so much.
Where do we get the user manual for this instrument?
Hi, may I know the name and background of the presenter? Thank you. This video is so valuable!
Thank you very much for this. Now I have to learn how to operate FacsCanto, FacsMelody,FacsLyric, LSR etc.
One of UC Merced's strengths besides energy materials is stem cell research. Their facility is top notch!
thanks alot for your great and practical tric🙏🏻🙏🏻, you can either put a small fixed thing instead of a spring for passing this error
Thanks for the tutorial! Very clearly explained! One question about comparing FlowSOM population frequencies. Let's say I have a control and a treatment group, with 5 samples in each group. I create a single concatenated file with all 10 samples, then separate each sample using sample ID gates, and then run FlowSOM on that whole concatenated file. Then I drag and drop the created FlowSOM population gates onto each one of the Sample ID gates. My question is: Can I then run a simple two-tailed t-test to compare the frequency of a given flowSOM population between control and treatment samples? Would that be statistically valid/"legal"?
Great question.. wouldlove to know this too
I have the same question!
Thanks bro. This really helped a lot.
Thank you!!! That makes sense for the beginner!
Thank you so much. It's very useful!
It is a great tutorial! Well explained, moving with good speed and presented in a very logical fashion. Thank you so much!
Thank you for such a great video! I am learning flow cytometry and this helps a lot
When you ran the compensation, did you run Low or High? And also for the cells? Thanks
Character In the video It's great, I like it a lot $$
The video sound is pretty good, beyond my imagination