![Dennis Madsen](/img/default-banner.jpg)
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Dennis Madsen
Switzerland
เข้าร่วมเมื่อ 2 ม.ค. 2015
Videos exploring topics within machine learning. A mix of lecture-style and coding tutorials.
How to Shape Model - EXTRA - MODEL VISUALIZATION
The seventh video in the tutorial series on creating 3D Statistical Shape Models using Scala and the Scalismo library.
In this video, I cover different methods to visualize your created statistical shape model, such as:
- manual inspection
- exporting the model to a gif file
- colour encoded mesh showing point correlation
- model deformation visualization.
Timeline:
0:00 Introduction
0:32 Creating a Shape Model GIF
4:15 Point-correlation color mesh
5:15 Model deformation visualization
5:54 Summary
LINKS:
- How to shape model playlist: th-cam.com/play/PLPmOaPsuoeltjdVRHqDXfN5tcUxZRrQ7j.html
- GitHub Repository: github.com/madsendennis/how-to-shape-model
- Blog post of the video content: dennismadsen.me/posts/how-to-shape-model-part6/
- Shape Model Demo Applications: th-cam.com/video/__1tvaIKtaU/w-d-xo.html
- Scalismo official website: scalismo.org/
- Imagemagisk: imagemagick.org/index.php
- Original data source, MICCAI (VerSe: Large Scale Vertebrae Segmentation Challenge 2020): github.com/anjany/verse
Scalismo mailing list to post Scalismo-related questions: groups.google.com/g/scalismo
------------------------------------------------------------------------------------------------
Follow me here for more content:
🌐 LINKEDIN ‧ www.linkedin.com/in/madsendennis/
In this video, I cover different methods to visualize your created statistical shape model, such as:
- manual inspection
- exporting the model to a gif file
- colour encoded mesh showing point correlation
- model deformation visualization.
Timeline:
0:00 Introduction
0:32 Creating a Shape Model GIF
4:15 Point-correlation color mesh
5:15 Model deformation visualization
5:54 Summary
LINKS:
- How to shape model playlist: th-cam.com/play/PLPmOaPsuoeltjdVRHqDXfN5tcUxZRrQ7j.html
- GitHub Repository: github.com/madsendennis/how-to-shape-model
- Blog post of the video content: dennismadsen.me/posts/how-to-shape-model-part6/
- Shape Model Demo Applications: th-cam.com/video/__1tvaIKtaU/w-d-xo.html
- Scalismo official website: scalismo.org/
- Imagemagisk: imagemagick.org/index.php
- Original data source, MICCAI (VerSe: Large Scale Vertebrae Segmentation Challenge 2020): github.com/anjany/verse
Scalismo mailing list to post Scalismo-related questions: groups.google.com/g/scalismo
------------------------------------------------------------------------------------------------
Follow me here for more content:
🌐 LINKEDIN ‧ www.linkedin.com/in/madsendennis/
มุมมอง: 116
วีดีโอ
How to Shape Model - EXTRA - MODEL EVALUATION
มุมมอง 1164 หลายเดือนก่อน
The sixt video in the tutorial series on creating 3D Statistical Shape Models using Scala and the Scalismo library. In this video, I cover different methods to evaluate your created statistical shape model, such as: visual inspection, landmark based evaluation, partial mesh reconstruction and common model evaluation metrics (generalization, specificity, compactness). Timeline: 0:00 Introduction...
How to Shape Model - Part5 - FITTING
มุมมอง 1144 หลายเดือนก่อน
The fifth video in the tutorial series on creating 3D Statistical Shape Models using Scala and the Scalismo library. In this video, I cover how to use a deformable model to perform non-rigid surface registration, aka. fitting. Timeline: 0:00 Introduction 0:42 Landmark "fitting" 1:32 Iterative Closest Point (non-rigid) manual coding 3:25 Closest point methods 3:58 Correspondence uncertainty 4:25...
How to Shape Model - Part4 - KERNELS
มุมมอง 1414 หลายเดือนก่อน
The fourth video in the tutorial series on creating 3D Statistical Shape Models using Scala and the Scalismo library. In this video, I cover how to deform a mesh by analytically defining kernels. Timeline: 0:00 Introduction 0:52 Kernel overview 1:28 Gaussian Kernel 6:08 Symmetry Kernel 7:03 Changepoint Kernel 8:02 Kernel Augmentation 8:39 Summary LINKS: - How to shape model playlist: th-cam.com...
How to Shape Model - Part3 - TEMPLATE DESIGN
มุมมอง 1314 หลายเดือนก่อน
The third video in a tutorial series on creating 3D Statistical Shape Models using Scala and the Scalismo library. In this video, I cover four different methods of creating a template/reference mesh to be used for creating a statistical shape model. This step dramatically simplifies the fitting step when creating the model. Timeline: 0:00 Introduction 0:50 Template Design Overview 3:05 Manual C...
How to Shape Model - Part2 - RIGID ALIGNMENT
มุมมอง 1725 หลายเดือนก่อน
The second video in a tutorial series on creating 3D Statistical Shape Models using Scala and the Scalismo library. In this video, I cover four different methods for rigidly aligning your dataset. This step dramatically simplifies the steps to create a statistical shape model. Timeline: 0:00 Introduction 0:30 Dataset alignment overview 1:22 Centre/Origin Alignment 2:14 Principal Component Align...
How to Shape Model - Part1 - POINT-CORRESPONDENCE
มุมมอง 3565 หลายเดือนก่อน
This is the first video in a tutorial series on creating 3D Statistical Shape Models using Scala and the Scalismo library. I cover the steps needed to create a statistical shape model using the Scalismo library in Scala and point-correspondence (the main requirement for your data). Timeline: 0:00 Introduction 0:15 Understanding Statistical Shape Models 0:40 Vertebrae Shape Model Example 1:12 Se...
Dennis Madsen - PhD Defense presentation
มุมมอง 4583 ปีที่แล้ว
Final rehearsal of my PhD Defense before the actual one takes place. As the real Defense will be in person and with a mask on, I made this recording to make sure that a version would be available with a decent audio track. Give a thumbs up to show your support!
Scalismo getting started with IntelliJ IDEA - Setup tutorial
มุมมอง 1.1K3 ปีที่แล้ว
Showing how to set up the statistical shape modeling library Scalismo to be used together with the IntelliJ IDEA from Jetbrains (www.jetbrains.com/idea/). Written tutorial: scalismo.org/docs/ide/ Scalismo google mailing list: groups.google.com/g/scalismo Gitter: gitter.im/unibas-gravis/scalismo
Scalismo demo Applications - a Statistical Shape Modelling Library in Scala
มุมมอง 1.4K3 ปีที่แล้ว
Scalismo official website: scalismo.org/ Scalismo tutorials: scalismo.org/docs/#tutorials Setting up scalismo with the IntelliJ IDE: scalismo.org/docs/ide Scalismo library source code: github.com/unibas-gravis/scalismo Timeline: 0:06 Introduction 0:55 Scalismo website 2:32 Hello world project in Scalismo 5:12 Scalismo Demos 5:59 Non-rigid surface registration 6:33 Non-rigid image registration/s...
PyTorch - The Basics of Transfer Learning with TorchVision and AlexNet
มุมมอง 8K3 ปีที่แล้ว
Basic usage of PyTorch. From simple low-level usage of Adagrad to building up your neural networks with the model.nn module from PyTorch. In this video we look at how to use a pre-trained AlexNet for transfer learning. We do so by removing the last layer of the network, and retraining the weights from our own small dataset. Notebooks: github.com/madsendennis/notebooks/tree/master/pytorch Origin...
PyTorch - Torch vision for pretrained models (AlexNet)
มุมมอง 16K3 ปีที่แล้ว
Basic usage of PyTorch. From simple low-level usage of Adagrad to building up your neural networks with the model.nn module from PyTorch. In this video we look at how to use a pre-trained AlexNet to perform image classification on our own images. Notebooks: github.com/madsendennis/notebooks/tree/master/pytorch Original blogpost link: www.learnopencv.com/pytorch-for-beginners-image-classificatio...
PyTorch - Linear Regression implementation
มุมมอง 4.6K3 ปีที่แล้ว
Basic usage of PyTorch. From simple low-level usage of Adagrad to building up your neural networks with the model.nn module from PyTorch. In this video we look at how to implement a simple linear regression algorithm as a neural network. Notebooks: github.com/madsendennis/notebooks/tree/master/pytorch PyTorch playlist: th-cam.com/video/I1WcY1gX8PM/w-d-xo.html Deep Learning introduction playlist...
PyTorch - The Basics
มุมมอง 6K3 ปีที่แล้ว
Basic usage of PyTorch. From simple low-level usage of Adagrad to building up your neural networks with the model.nn module from PyTorch. Notebooks: github.com/madsendennis/notebooks/tree/master/pytorch PyTorch playlist: th-cam.com/video/I1WcY1gX8PM/w-d-xo.html Deep Learning introduction playlist: th-cam.com/video/euUyT4ggorE/w-d-xo.html
Deep Learning: Part6 - Generative Models - Beyond the Basics
มุมมอง 1853 ปีที่แล้ว
Basic introduction to the area of deep learning. This video focuses on using deep-learning as a generative model and some discussion about the future of deep-learning. Slides: github.com/madsendennis/madsendennis.github.io/blob/master/files/DNN_4_Sequences.pdf
Deep Learning: Part5 - Sequence Models (RNN, LSTM, GRU, Transformers)
มุมมอง 2.1K3 ปีที่แล้ว
Deep Learning: Part5 - Sequence Models (RNN, LSTM, GRU, Transformers)
Deep Learning: Part4 - CNN Architectures
มุมมอง 3793 ปีที่แล้ว
Deep Learning: Part4 - CNN Architectures
Deep Learning: Part3 - Convolutional Neural Networks (CNNs)
มุมมอง 2133 ปีที่แล้ว
Deep Learning: Part3 - Convolutional Neural Networks (CNNs)
Deep Learning: Part1 - Introduction to the basics
มุมมอง 9283 ปีที่แล้ว
Deep Learning: Part1 - Introduction to the basics
Deep Learning: Part2 - Hyperparameter tuning
มุมมอง 3213 ปีที่แล้ว
Deep Learning: Part2 - Hyperparameter tuning
Learning Shape Priors from Pieces (ShapeMi @ MICCAI 2020)
มุมมอง 2714 ปีที่แล้ว
Learning Shape Priors from Pieces (ShapeMi @ MICCAI 2020)
Slicer 3D for Volumetric Image Segmentation/labelling - Basic segmentation usage
มุมมอง 9K4 ปีที่แล้ว
Slicer 3D for Volumetric Image Segmentation/labelling - Basic segmentation usage
A Closest Point Proposal for MCMC-based Probabilistic Surface Registration (ECCV2020)
มุมมอง 3774 ปีที่แล้ว
A Closest Point Proposal for MCMC-based Probabilistic Surface Registration (ECCV2020)
A Closest Point Proposal for MCMC-based Probabilistic Surface Registration (ECCV2020 - Poster)
มุมมอง 2214 ปีที่แล้ว
A Closest Point Proposal for MCMC-based Probabilistic Surface Registration (ECCV2020 - Poster)
Probability Theory Refresher/Tutorial for ML/PR students
มุมมอง 1794 ปีที่แล้ว
Probability Theory Refresher/Tutorial for ML/PR students
3D Image Segmentation (CT/MRI) with a 2D UNET - Part3: Volume Segmentation
มุมมอง 9K4 ปีที่แล้ว
3D Image Segmentation (CT/MRI) with a 2D UNET - Part3: Volume Segmentation
3D Image Segmentation (CT/MRI) with a 2D UNET - Part2: Model training with TensorFlow 2
มุมมอง 14K4 ปีที่แล้ว
3D Image Segmentation (CT/MRI) with a 2D UNET - Part2: Model training with TensorFlow 2
3D Image Segmentation (CT/MRI) with a 2D UNET - Part1: Data preparation
มุมมอง 29K4 ปีที่แล้ว
3D Image Segmentation (CT/MRI) with a 2D UNET - Part1: Data preparation
Setup PyCharm to use a Conda environment
มุมมอง 53K4 ปีที่แล้ว
Setup PyCharm to use a Conda environment