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Kamryn Bioinformatics
เข้าร่วมเมื่อ 29 ก.ค. 2018
Going to start making bioinformatic videos for the technologically challenged (myself included) but will try my best to make sure they are as accurate (but simple) as possible.
Automated Model 919 Moister Meter Demo - Dimo's / Labtronics
Automated 919 demo for website embed.
To view this product on our website, visit the following link:
halross.com/product/automated-model-919-moisture-tester/
Or to learn more, visit: halross.com
Music credits: www.bensound.com/free-music-for-videos
To view this product on our website, visit the following link:
halross.com/product/automated-model-919-moisture-tester/
Or to learn more, visit: halross.com
Music credits: www.bensound.com/free-music-for-videos
มุมมอง: 943
วีดีโอ
Sampler Probe Demo - Dimo's / Labtronics
มุมมอง 1102 ปีที่แล้ว
Sampler probe demo for website embed. To view this product on our website, visit the following link: halross.com/product/sampler-probe-6-ft-69/ Or to learn more, visit: halross.com Music credits: www.bensound.com/free-music-for-videos
Canola Sieve Set Demo - Dimo's / Labtronics
มุมมอง 2842 ปีที่แล้ว
Canola Sieve set demo for website embed. To view this product on our website, visit the following link: halross.com/product/canola-sieve-set/ Or to learn more, visit: halross.com Music credits: www.bensound.com/free-music-for-videos
100 Count Canola Kit Demo - Dimo's / Labtronics
มุมมอง 2382 ปีที่แล้ว
Canola Kit demo for website embed. To view this product on our website, visit the following link: halross.com/product/100-count-canola-kit/ Or to learn more, visit: halross.com Music credits: www.bensound.com/free-music-for-videos
Grain Density Scale Demo - Dimo's Labtronics
มุมมอง 3712 ปีที่แล้ว
Grain density scale demo for website embed. To view this product on our website, visit the following link: halross.com/product/grain-density-scale/ Or to learn more, visit: halross.com Music credits: www.bensound.com/free-music-for-videos
Portable Combine Demo - Dimo's / Labtronics
มุมมอง 9592 ปีที่แล้ว
Portable Combine demo for embed. To view this product on our website, visit the following link: halross.com/product/simpler-sampler-portable-combine/ Or to learn more, visit: halross.com Music credits: www.bensound.com/free-music-for-videos
Fertilizer Density Scale Demo - Dimo's / Labtronics
มุมมอง 6642 ปีที่แล้ว
Fertilizer density scale demo for website embed. To view this product on our website, visit the following link: halross.com/product/fertilizer-bulk-density-scale/ Or to learn more, visit: halross.com Music credits: www.bensound.com/free-music-for-videos
Digital Scale demo - Dimo's / Labtronics
มุมมอง 1262 ปีที่แล้ว
600g x 0.1 grams digital scale demo video for website embed. To view this product on our website, visit the following link: halross.com/product/dimos-labtronics-600g-x-0-1grams-digital-scale/ Or for more information, visit halross.com Music credits to: www.bensound.com/free-music-for-videos
Test Weight Determination Procedure - Dimo's Tool & Die / Labtronics
มุมมอง 1322 ปีที่แล้ว
Learn more at halross.com (Apologies for spelling commodity* wrong) Video for website embed. Music credit: www.bensound.com/free-music-for-videos
Automatic Seed Counter Demo
มุมมอง 1.9K2 ปีที่แล้ว
File for website embed. halross.com Music by: www.bensound.com/free-music-for-videos
How to use Google Colab Alphafold2 and ChimeraX
มุมมอง 23K2 ปีที่แล้ว
This is a quick instructional video for the botany lab, but I will make it public in case it can be helpful to anyone else. I tried to keep this video short, so I kept explanations vague. However, I will make more in-depth videos soon if this proves to be useful! Links: Colab AlphaFold2 - colab.research.google.com/github/sokrypton/ColabFold/blob/main/AlphaFold2.ipynb ChimeraX download - www.rbv...
cpscFinalProjectPresentation(n5y2b)
มุมมอง 1023 ปีที่แล้ว
Quadric Surface Equation Generator (presentation)
Quantum Pressures: The methods behind pressure realization
มุมมอง 793 ปีที่แล้ว
SCIE300 final project by Kamryn and Nadia
This is an excellent video introduction to using alphafold in google colab. I've been trying to get a handle on what I could do to incorporate alphafold into my basic bioinformatics course and this is the first time I feel like I could learn enough to know where to start. Excellent work!
dude, how are you so cool. how did tell so many important things in under 5 minutes!!!!!?!?!?!?!?
Thanks
Many thanks! Very helpful!♥
Good video <3
There is new update on alphfold 3 could you please make an tutorial on that
The most informative video on TH-cam that accually worked. Thank you a lots!
Can we prepare multimer of a protein with alphafold?
Why is it that I feel like this needs to be done through some UI and thereby make it so much easier? 😅
what is the opening dimensions (Width and Length) of the 69 " sampling Probe ?
Very helpful, thank you a lots!
Very helpful! What is the difference between the individual models that alphafold provides and how do you choose which one to take?
what if I am not getting PDB file in the output folder? what could be a problem?
Sorry for the late reply - I've never heard of this problem but would like to help. Could you email me a screenshot of the output folder (kamryndiehl57@gmail.com) if the problem is persisting?
I have the same problem
Were you able to solve the problem?
@@LauraMuller-pn9nh yes. Just save the file with extension. Pdb, and you will be able to use it
Loved this, thanks so much! Pretty sure I just predicted the structure of my mutated T/P53 protein vs. wild type (one of my cancer's simpler missense mutations, l111q) and though I've no idea what to do with it yet, it was a fun exercise. 🙂 Please make more, you're inspiring me to a second career!
Thank you for your tutorial. I wonder what if it appears the same bug (download fails) when I try to do it through web browser like google chrome. Can I download manually on the left side bar? Which file should I download on the left side bar of the colab web window? By the way, the bug (download fails) only happens for me when I choose all the three options before running predict.
Can you please explain how to get a written results after matching both pdf files
Brilliant, thanks. Using your excellent tutorial, I was able to have a structure predicted from a dinoflagellate gene on Colab AF2 and then match it to a known structure from rice in ChimeraX very quickly not having used either package before. These two genes last shared a common ancestor ~2b years ago, and the aligned structures showed me where the major differences are.
Most concise and informative video on alphafold2!
Hi, this was a very nice video. I also had a video on using alphafold2 when it was the early days of using it before they predict the structure of every single protein and put it in the ebi database!
super cool!
Great Video!
Thanks! Brilliant overview for alphafold and Chimera under 5 mins. Would enjoy a more in-depth video, especially on what is next after the matchmaker command e.g., How do one make a conclusion or analysis on the comparison between the wildtype and mutant, etc.
Thanks so much! I'm on it :)
@@kamdiehl I agree- Have you put this longer video together? I'm a novice with colab and alphafold and I would love to build some confidence using these utilities. I'm also happy to halp collaborate on these if you'd enjoy working together. I have several simple ideas on how to apply these tools to some accessible cases for my students but need to learn to use them better.