Doug Mercer
Doug Mercer
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How Fast can Python Parse 1 Billion Rows of Data?
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-------------------------------
Sign up for 1-on-1 coaching at dougmercer.dev
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The 1 billion row challenge is a fun challenge exploring how quickly we can parse a large text file and compute some summary statistics. The coding community created some amazingly clever solutions.
In this video, I walk through some of the top strategies for writing highly performant code in Python. I start with the simplest possible approach, and work my way through JIT compilation, multiprocessing, and memory mapping. By the end, I have a pure Python implementation that is only one order of magnitude slower than the highly optimized Java challenge winner.
On top of that, I show two much simpler, but just as performant solutions that use the polars dataframe library and duckdb (in memory SQL database). In practice, you should use these, cause they are incredibly fast and easy to use.
If you want to take a stab at speeding things up further, you can find the code here github.com/dougmercer-yt/1brc.
References
------------------
Main challenge - github.com/gunnarmorling/1brc
Ifnesi - github.com/ifnesi/1brc/tree/main
Booty - github.com/booty/ruby-1-billion/
Danny van Kooten C solution blog post - www.dannyvankooten.com/blog/2024/1brc/
Awesome duckdb blog post - rmoff.net/2024/01/03/1%EF%B8%8F%E2%83%A3%EF%B8%8F-1brc-in-sql-with-duckdb/
pypy vs Cpython duel blog post - jszafran.dev/posts/how-pypy-impacts-the-performance-1br-challenge/
Chapters
----------------
0:00 Intro
1:09 Let's start simple
2:55 Let's make it fast
10:48 Third party libraries
13:17 But what about Java or C?
14:17 Sponsor
16:04 Outro
Music
----------
"4" by HOME, released under CC BY 3.0 DEED, home96.bandcamp.com/album/resting-state
Go buy their music!
Disclosure
-----------------
This video was sponsored by Brilliant.
#python #datascience #pypy #polars #duckdb #1brc
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ความคิดเห็น

  • @abdimajid684
    @abdimajid684 วันที่ผ่านมา

    For someone that did a huge DP coding in python. One common problem with like cython is that it does not support so many functions from numpy (good luck using argmax)

  • @N____er
    @N____er วันที่ผ่านมา

    How do you optimise python performance without any external libraries or programs? Just native python3 with the standard pre-installed libraries.

    • @dougmercer
      @dougmercer วันที่ผ่านมา

      Hmm, I guess the only way would be to write efficient code. I'd profile the code to see what functions are taking the most time, and then focus on improving the slow/frequently called ones Use the right data structures/algorithms. consider using functools.cache to memoize anything that would benefit from caching. reprofile your code after each change to quantify what changes were helpful. You can technically write your own c extensions if your system has a c compiler, but that's probably not what you want.

  • @joaovitormeyer7817
    @joaovitormeyer7817 วันที่ผ่านมา

    for anyone interested, I copyed his c++ code and his example with 30000 elements in each vector, and in my computer it ran in ~25 seconds (my PC is slow). By simply compiling with -Ofast, it got down to ~5 seconds, still without modifying the code at all. I'm not hating in the content of the video, wich in fact is great

    • @dougmercer
      @dougmercer วันที่ผ่านมา

      I compiled the C++ with -O3 for this video gist.github.com/dougmercer/1a0fab15abf45d836c2290b98e6c1cd3

  • @Saddl3r
    @Saddl3r 2 วันที่ผ่านมา

    Great editing. What programs do you use? A "making-of" video would be very interesting!

    • @dougmercer
      @dougmercer 2 วันที่ผ่านมา

      Thanks! This video I used a mixture of Manim to render the syntax highlighted code and Davinci Resolve to do the call outs. In later videos I use exclusively Davinci Resolve (+ a Python script to turn my code into a syntax highlighted fusion composition). I'm actually working on writing my own animation library that's similar to manim, but is more tailored for me/the sort of videos I make. I plan on making a video about it as one of my next two videos. so, stick around for that =]

    • @Saddl3r
      @Saddl3r วันที่ผ่านมา

      @@dougmercer Thanks!! 🌟

  • @Macatho
    @Macatho 4 วันที่ผ่านมา

    I'm curious how fast this would run with a GPU implementation. I loved this video, hope you'll extend it with a GPU implementation :)

    • @dougmercer
      @dougmercer 4 วันที่ผ่านมา

      Someone did a Dask + cuDF implementation. Seems super fast github.com/gunnarmorling/1brc/discussions/487

  • @Macatho
    @Macatho 4 วันที่ผ่านมา

    You cant possibly be such a purist that you dont use numpy or pandas 😅😅

    • @dougmercer
      @dougmercer 4 วันที่ผ่านมา

      I tried them! Way slower for this task Using this pandas implementation github.com/Butch78/1BillionRowChallenge/blob/main/python_1brc%2Fmain.py takes about 150s, but polars takes 11-12s

  • @SimpaTheImba
    @SimpaTheImba 5 วันที่ผ่านมา

    14:10 my man, can't agree more

    • @dougmercer
      @dougmercer 5 วันที่ผ่านมา

      Hahaha absolutely =]

  • @arnabchatterjee2094
    @arnabchatterjee2094 6 วันที่ผ่านมา

    basically prefect is celery with steroids

    • @dougmercer
      @dougmercer 6 วันที่ผ่านมา

      That's typically how I use the open source library! I recently spoke with someone from Prefect at PyCon, and they said the automation features and more celery-esque features are coming to the OS library soon. So keep an eye on that =]

  • @ryanshea5221
    @ryanshea5221 6 วันที่ผ่านมา

    How to write fast Python: Write C

    • @dougmercer
      @dougmercer 6 วันที่ผ่านมา

      Well... I write Python, and let PyPy compile itself down to C =]

  • @nathan22211
    @nathan22211 7 วันที่ผ่านมา

    I feel like you could get similar performance using lupa + lua_importer or nimporter/nython. Both lua and nim are similar in difficulty to python, though I think nim is somewhat like rust when it comes to how to code it.

    • @dougmercer
      @dougmercer 7 วันที่ผ่านมา

      This is my first time hearing about either of those. Very interesting 🤔

  • @AlexanderHyll
    @AlexanderHyll 8 วันที่ผ่านมา

    I mean all this is saying is if python wraps a low level language it gets low level performance. Not that huge of a revelation. Thats how pythons entire data science world runs.

    • @dougmercer
      @dougmercer 8 วันที่ผ่านมา

      That, *and* users don't necessarily need to write their own low level code to get that speed up

  • @Big_bangx
    @Big_bangx 8 วันที่ผ่านมา

    What about optimizing your C++ implementation instead to go faster ?

  • @gawwad4073
    @gawwad4073 9 วันที่ผ่านมา

    Nice video. VERY good writing and editing. Smooth as hell, keep it up!

    • @dougmercer
      @dougmercer 9 วันที่ผ่านมา

      Thanks =]

  • @tangerie1284
    @tangerie1284 9 วันที่ผ่านมา

    I wonder how fast an AOT compiler like nuitka would make it

    • @dougmercer
      @dougmercer 9 วันที่ผ่านมา

      Yeah, I wonder that too. I'm also curious if anyone has a Cython solution...

  • @affrokilla
    @affrokilla 9 วันที่ผ่านมา

    A 50x speedup between a for loop and a polars dataframe is really significant, great video!

    • @dougmercer
      @dougmercer 9 วันที่ผ่านมา

      Polars/Duckdb are crazy fast. Thanks for watching!

  • @user-uc6wo1lc7t
    @user-uc6wo1lc7t 11 วันที่ผ่านมา

    Well... Your python code is not well "optimized" too =) 1. a, b - np.array, so you use numpy in your pure python code (that is not fair). Moreover, switching to lists gives you speedup (I'm shocked too). But, maybe you did so... You did not show us "all" code. 2. max of two elements is not faster than pure if-else. And if you use it - you need to extract dp[prev_i, j] and dp[i, prev_j] to variables to not duplicate accessing to elements. 3. Your i-1 and j-1 can be evaluated in corresponding loops and saved to variables. The same argument for len(a|b) + 1. Can be evaluated once. With all these I could speedup pure python up to +70% performance on my Ryzen 5 3600X. And it was consistant through N = 3_000, N = 10_000, so all my tests with numpy was with N = 3_000 to not waste too much time. Therefore optimized python code faster than not optimized numpy code by ~82.2%. If you apply 2) and 3) optimizations to numpy version, optimized python code faster by ~77.5%. I even tried different logic for numpy and python versions where dp is 1d array, but python version became slower, while numpy version made some poor progress (optimized numpy with different logic faster than optimized numpy by ~5%). Well, it was intresting. Never expirienced numpy code slower than pure python. Maybe because operations are so fast that switching to numpy types make it worse...

    • @dougmercer
      @dougmercer 11 วันที่ผ่านมา

      I didn't use numpy in the pure Python implementation... See the code at 1:59. That's why I mentioned numpy was surprisingly so much slower in the numpy section. As for the other stuff... You're right that there might be other small tweaks you could make to the various implementations. Thanks for pointing them out

    • @user-uc6wo1lc7t
      @user-uc6wo1lc7t 10 วันที่ผ่านมา

      ​@@dougmercer From the timestamp you gave I can't deduct if a,b are lists or np.array s because they were created by numpy functions as you have shown at 2:10 . But I'm pretty sure you DID convert a, b to lists, but it could be actually seen when you used mypy and created type hints. I just forgot about it because I was fully invested in pure python and numpy. Sorry, I didn't mean to say your benchamrks are bad, they are actually pretty good. Your video is a lifechanger for me. Previously, I used numpy without any hesitation, even in loops that doesn't leverage vectorization. And, strangly, numpy ave me speedup. So I tried to code your example in disbelive. But, undoubtfully, your code is a good example that I was wrong. But that leaves me with questions how could I get speedup in my previous code...? Maybe I was useing vectorization... Can't remember. Seems like I'm gonna benchmark my old code and test it against pure python implementation. Recently I watched one guy who was benchmarking nested loops. He was trying to proove that smaller outer loops gives +30% performance. But he didn't even realized what exactly he was benchmarking and fooled a lot of people and ignoring me even I gave him math proof of results he got. And conditions to get 30+% boost are extremely vague. So I lost my beliefs in such type of videos. But your... is really good. Thanks a lot!

    • @dougmercer
      @dougmercer 10 วันที่ผ่านมา

      @@user-uc6wo1lc7t Ah I see what you're saying. I believe I coerced them to lists but I'm not 100% sure. I'll have to double check later. And definitely agree- I always reach for numpy, and it's surprising when it doesn't help! In this case, indexing into the arrays to do a lot of scalar operations is slower. We typically get the speed up when we can do vectorization. Thanks for watching and the thoughtful comments =]

  • @UndyingEDM
    @UndyingEDM 11 วันที่ผ่านมา

    The video editing is top notch too!

    • @dougmercer
      @dougmercer 11 วันที่ผ่านมา

      Thanks =]

  • @Slightlymisshapen
    @Slightlymisshapen 11 วันที่ผ่านมา

    Beautiful presentation. I love your descriptions on libraries. The illustrative code break down puts context and concrete examples on what would otherwise be yet more abstract documentation. It helps to grasp the utility of the libraries uou describe not just in this video but all of them. Fantastic work.

    • @dougmercer
      @dougmercer 11 วันที่ผ่านมา

      Aw, thanks! glad you enjoyed it, and thanks for your super nice comment =]

  • @silloo2072
    @silloo2072 11 วันที่ผ่านมา

    Why no c++ optimisation

    • @dougmercer
      @dougmercer 11 วันที่ผ่านมา

      I did -O3 compile the C++, but this channel is mostly focused on Python devs. So the idea is, what would someone unfamiliar with C++ write... That said, structuring as a 1D array does achieve some speed up, but still only slightly faster than Numba/Taichi , so it doesn't really change the story

  • @ogrp5777
    @ogrp5777 12 วันที่ผ่านมา

    What about pypy?

    • @dougmercer
      @dougmercer 11 วันที่ผ่านมา

      I covered PyPy in my latest video ("How fast can Python parse 1 billion rows of data")

    • @ogrp5777
      @ogrp5777 11 วันที่ผ่านมา

      @@dougmercer I just saw the video, that was brilliant! Thanks

  • @ali.moumneh
    @ali.moumneh 13 วันที่ผ่านมา

    your video quality is top notch, im sure it will soon equate to video views if you keep this up, good luck.

    • @dougmercer
      @dougmercer 12 วันที่ผ่านมา

      Thanks! I hope so too 🤞

  • @DepressedMusicEnjoyer
    @DepressedMusicEnjoyer 15 วันที่ผ่านมา

    As much as I like the video the 6 times slower not being a problem kinda drives me crazy as a person doing low level coding 😭 Like yeah you’re right for a lot of stuff it doesn’t matter, but then imagine 5 vs 30 fps, and then if it’s nested within another thing you may get exponentially slower. I have been trying to make a 480mhz mcus cpu do rendering and it’s difficult to get 30 fps ish and well if using python would mean 6 times slower I woudlnt be happy no matter how much easier my code would be to understand

    • @dougmercer
      @dougmercer 15 วันที่ผ่านมา

      That's fair. Some things are worth squeezing all the performance out It will be nice when PyPy supports sub-interpreters or no-GIL... it will eventually be possible to close the gap more

  • @0MVR_0
    @0MVR_0 15 วันที่ผ่านมา

    should not have watched this video, considering the fact that I have been waiting two days for my implementation of kendal's Tau to finish,

    • @dougmercer
      @dougmercer 15 วันที่ผ่านมา

      Oh no 💀 Numba + numpy or PyPy would probably help

  • @rverm1000
    @rverm1000 18 วันที่ผ่านมา

    That's nice of you to point these libraries out.

    • @dougmercer
      @dougmercer 18 วันที่ผ่านมา

      Thanks!

  • @bbajr
    @bbajr 18 วันที่ผ่านมา

    is pandas slow?

    • @dougmercer
      @dougmercer 18 วันที่ผ่านมา

      It would be for something like this! Using this pandas implementation github.com/Butch78/1BillionRowChallenge/blob/main/python_1brc%2Fmain.py takes about 150s, but polars takes 11-12s

  • @gencurrent
    @gencurrent 19 วันที่ผ่านมา

    It's hard to watch this with all the whistles and blowers and another hangers, glitters and so on. Kindly, stop using those! The interesting video turns into a torture session!!

    • @dougmercer
      @dougmercer 19 วันที่ผ่านมา

      Still trying to find my style/voice ¯\_(ツ)_/¯ Check out my two more recent videos. They have less intrusive editing

    • @gencurrent
      @gencurrent 19 วันที่ผ่านมา

      @@dougmercer Thank you Doug : )

  • @joaoguerreiro9403
    @joaoguerreiro9403 20 วันที่ผ่านมา

    Damn, this was an instant follow! Hope to see more computer science content 🙏🏼 Great video :)

    • @dougmercer
      @dougmercer 19 วันที่ผ่านมา

      Thanks so much =]

  • @Jp-ue8xz
    @Jp-ue8xz 23 วันที่ผ่านมา

    c++ -O3 flag: am i a joke to you?

    • @dougmercer
      @dougmercer 23 วันที่ผ่านมา

      It was -O3 optimized gist.github.com/dougmercer/1a0fab15abf45d836c2290b98e6c1cd3

  • @RiadAhmed-ce6qo
    @RiadAhmed-ce6qo 23 วันที่ผ่านมา

    python use third party compiler as well to execute fast.

  • @MaxiveLegend
    @MaxiveLegend 24 วันที่ผ่านมา

    1. "Some of these solutions are gonna be as fast or even faster than my C++ implementation" just means your C++ is bad lol. The python interpreter was built in C, so by definition a python program can never be faster than , or even as fast as C. C++ is SLIGHTLY slower than C, but python would never fall in between them. 2. Making python "faster" by transpiling it to C isn't making PYTHON faster, it's just converting it to C. It's basically like saying "I'm going to upgrade my Renault Twingo" and then getting a Bugatti Veyron

    • @patfre
      @patfre วันที่ผ่านมา

      Yeah

  • @smithdoesstuff
    @smithdoesstuff 24 วันที่ผ่านมา

    Kinda bummed I wasn’t sub 10k

    • @dougmercer
      @dougmercer 24 วันที่ผ่านมา

      Hah! I'm at 9,991 subs, so good news! Hopefully crossing 10k mark soon =] 🤞

  • @CottidaeSEA
    @CottidaeSEA 26 วันที่ผ่านมา

    I shit on Python a lot for being slow, but honestly, 8-10 seconds to read 1 billion rows is sufficient in most scenarios.

  • @joseduarte9823
    @joseduarte9823 27 วันที่ผ่านมา

    Depending on how large the total sum actually is, using an incremental mean may yield better performance since python won’t need to upgrade the number to a big int

    • @dougmercer
      @dougmercer 27 วันที่ผ่านมา

      Neat idea... It's worth a shot! Feel free to fork the repo and give it a try

  • @nikilragav
    @nikilragav 28 วันที่ผ่านมา

    are you allowed to use numpy or gpu (torch, cupy, etc)

    • @dougmercer
      @dougmercer 28 วันที่ผ่านมา

      You could use numpy, but I don't think it would help (the bottleneck is reading the data in). I did see some use Dask + cuDF (CUDA) and that was very fast. However, it wasn't allowed in the challenge because the evaluation system didn't have a GPU

    • @nikilragav
      @nikilragav 28 วันที่ผ่านมา

      @@dougmercer ah. Reminds me of another challenge I saw where IO is the bottleneck. Even there I'm wondering if writing the content to the GPU memory and back is too slow

  • @cottawalla
    @cottawalla 29 วันที่ผ่านมา

    I couldn't get your opening "performance critical python" out of my head and so missed the entire rest of the video.

    • @dougmercer
      @dougmercer 29 วันที่ผ่านมา

      ¯\_(ツ)_/¯

  • @jmidski5753
    @jmidski5753 หลายเดือนก่อน

    I think it's 60x faster not 100x. We don't have 100 seconds in a minute. Great video though!

    • @dougmercer
      @dougmercer หลายเดือนก่อน

      The clock visualization is a little confusing but... 256 seconds 2.56 seconds 100x difference

  • @BarafuAlbino
    @BarafuAlbino หลายเดือนก่อน

    Pypy? Nuitka?

    • @dougmercer
      @dougmercer หลายเดือนก่อน

      I tackled PyPy in my latest video if you're interested ("How fast can Python parse 1 billion rows of data")

  • @user-pg9nf2vq8s
    @user-pg9nf2vq8s หลายเดือนก่อน

    i would never use python, but i like watching how people optimize the hell out of something.

    • @dougmercer
      @dougmercer หลายเดือนก่อน

      There's something Zen about it 🧘

  • @ThisRussellBrand
    @ThisRussellBrand หลายเดือนก่อน

    Beautifully done!

    • @dougmercer
      @dougmercer หลายเดือนก่อน

      Thanks Russell =]

  • @ThisRussellBrand
    @ThisRussellBrand หลายเดือนก่อน

    This is a beautiful explanation. Thank you for sharing it.

    • @dougmercer
      @dougmercer หลายเดือนก่อน

      Glad it was helpful!

  • @alexnolfi3730
    @alexnolfi3730 หลายเดือนก่อน

    did you test out pandas to see how much slower it was than polars?

    • @dougmercer
      @dougmercer หลายเดือนก่อน

      It's way slower Using the pandas implementation in here github.com/Butch78/1BillionRowChallenge/blob/main/python_1brc%2Fmain.py takes about 150s, whereas the polars implementation takes 11-12s

  • @GRHmedia
    @GRHmedia หลายเดือนก่อน

    Can't really say you are just relying on python at that point. Well guess you can't say that to start with. Cpython runs on a JIT that is programmed in C to start with. If python is so great why don't they create a compiler with it to create a JIT that made from python that runs python.

    • @dougmercer
      @dougmercer หลายเดือนก่อน

      My focus on this video was libraries/approaches that let you either *write* python or interoperate with Python very seamlessly. I don't really care that Taichi or numba dips to LLVM. As for compilers written in Python... PyPy's JIT is written in RPython and compiles to C ¯\_(ツ)_/¯

  • @mohak9102
    @mohak9102 หลายเดือนก่อน

    How is this better than airflow?

    • @dougmercer
      @dougmercer หลายเดือนก่อน

      "better" is probably a matter of taste. I prefer it because it feels more like writing Python and less like writing a config file. There are several comparisons out there that dive into the differences. Here's a third party link comparing them + another approach (Argo) neptune.ai/blog/argo-vs-airflow-vs-prefect-differences

  • @mahdirostami7034
    @mahdirostami7034 หลายเดือนก่อน

    8:53 I cannot believe writing a parser would gain any performance considering the default one is probably implemented in C. I assume this is a case of pypy optimizing while running and I'm wondering if running this same script with cpython would result in worse performance.

    • @dougmercer
      @dougmercer หลายเดือนก่อน

      I expect that the custom parser would have worse performance in plain CPython, but I didn't test it

  • @rushcoc9605
    @rushcoc9605 หลายเดือนก่อน

    😮😅can you tell me how to measure how much time it take which part of code just by looking how ?

    • @dougmercer
      @dougmercer หลายเดือนก่อน

      1. A bit of intuition 2. A bit of being totally wrong (removing the constants that indicated which column was min, max, count, sum didnt speed up performance... I was trying too many things at once and accidentally bundled that change in with something else) 3. I used a lot of time.perf_counter() to measure that time that certain operations took and A/B tested them Normally, in CPython, I would typically profile using something like PyInstrument or other similar line-level profilers

  • @maurolimaok
    @maurolimaok หลายเดือนก่อน

    Nice channel. Hope it grows.

    • @dougmercer
      @dougmercer หลายเดือนก่อน

      Thanks Mauro! I hope so too🤞

  • @nangld
    @nangld หลายเดือนก่อน

    Instead of putting so much effort optimizing python, why not just use C/C++? Also multiple CPUs wont help, unless you have RAID0

    • @dougmercer
      @dougmercer หลายเดือนก่อน

      Multiple cores help even for C/C++

  • @this-one
    @this-one หลายเดือนก่อน

    Would it count as Python if we write it as a module in C?

    • @dougmercer
      @dougmercer หลายเดือนก่อน

      I'm no philosopher, but this gives me ship of theseus vibes. so... maybe technically but I don't feel good about it